Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0565 ATGTATGCCTTCTGCATGTGTATTCAACCACAAGCACCTCATTGTCTCCTTGCAGCTCTGAGGATGGAATACGCTGATATTGATAAAACTACAAGACCACTTGCAGTTTCCTGTATTCCTTTCTCATCATCTTCTCCTTCTTCGTCAAGGTTTTCTCCTCCTCCAACTGCCTTTCAAGGTCCTTGTGCTGCCTGCAAGGTCCTTAGACGTCGATGCGATGAGAGTTGTATTCTAGCTCCATATTTTCCACCAAATGAACCCTTAAAATTCATCAATGCCCATAAAGTCTTTGGAGCTAGCAACATCGCCAAGGCCTTGCAGGAACTTCCCCAGCCCACTAGAGCAGATGCTGTGAGCAGCATGGTTTATGAGGCAAATGCGAGAATTCGTGATCCAGTCTATGGTTGTGCAGGTACAATTTGCCATCTTCACAAACAGCTTTAA 444 0.4505 MYAFCMCIQPQAPHCLLAALRMEYADIDKTTRPLAVSCIPFSSSSPSSSRFSPPPTAFQGPCAACKVLRRRCDESCILAPYFPPNEPLKFINAHKVFGASNIAKALQELPQPTRADAVSSMVYEANARIRDPVYGCAGTICHLHKQL* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0565 147 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 59 147 - -
Vvi13g0565 147 ProSiteProfiles LOB domain profile. 60 147 IPR004883 -
Vvi13g0565 147 Pfam Lateral organ boundaries (LOB) domain 61 147 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0565 Vvi-Chr13 4999388 4999957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0565 60 147 AS2 family AT1G07900 72.727 9.61e-45 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi13g0565 LOB 6.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0565 - - vvi:100249585 228.794