Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0564 ATGGAATACACTGAGAAAACTACAAAACCACTTAAAGTTTTCAATAGTATTCATTTATTCTCCTCCTCCTCCTCCTCATCATCATCATCTTCTTCTTCTTCTTCAAGGTCGTCTTCTTTTCCAGCTGCCAGCCAAGGTCCTTGTGCTGCCTGTAAAGTCCTTCGTCGCCGATGCACCGAGAGTTGTATTTTAGCCCCATATTTTCCATCAACTAAACCATTCCAGTTCATCACTGCTCATAAAGTCTTTGGAGCCAGCAACATAATCAAGTGGTTGAAGGAAGTTCCAGAGACCAATAGAGCAGATGCTGTGAGCAGCATGGTCTATGAAGCAAATGCCAGAATTCTTGATCCAGTCTACGGGTGTGCTGGTGCGATTAGCAAGCTTCAGAAACAACTTGAAGAAGTGCAAGCAGAATTAGCCATGACGCAAGCTGAACTCCTTTTCATGCGATGCCAACAACAGCAACTAGATGATAATGCAAAGTTCCATAGAAATTCAGGCTCGGCCAATTGGGAATGA 522 0.4349 MEYTEKTTKPLKVFNSIHLFSSSSSSSSSSSSSSSRSSSFPAASQGPCAACKVLRRRCTESCILAPYFPSTKPFQFITAHKVFGASNIIKWLKEVPETNRADAVSSMVYEANARILDPVYGCAGAISKLQKQLEEVQAELAMTQAELLFMRCQQQQLDDNAKFHRNSGSANWE* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0564 173 MobiDBLite consensus disorder prediction 21 44 - -
Vvi13g0564 173 MobiDBLite consensus disorder prediction 21 45 - -
Vvi13g0564 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 45 159 - -
Vvi13g0564 173 ProSiteProfiles LOB domain profile. 46 147 IPR004883 -
Vvi13g0564 173 Pfam Lateral organ boundaries (LOB) domain 47 144 IPR004883 -
Vvi13g0564 173 Coils Coil 126 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0564 Vvi-Chr13 4972456 4973665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0564 47 157 AS2 family AT2G28500 65.766 1.70e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi13g0564 LOB 2.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0564 - - vvi:100256462 322.783