Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0562 ATGATGGAATACACTAACAAAACTAGAAGATCACTTAGAGTTTCCACTCCTTTCTCCTTTTCATCATCATCTTACTCTCCTTCTTTGATGCCTTCTCCTTCTCTTCCAACTGTTGTTCAAGGTCCTTGCGCCGCCTGCAAAGTCCTCCGCCGTCGATGCACAGACACATGCTCTTTAGCTCCATATTTTCCACCAAGTGAGCAGCTCAAATTCGTCATTGCCCATAAAGTCTTTGGAGCTAGCAACATTGTCAAGGCGTTGCAGGAACTTCCTGAGTCCAAAAGAGCAGATGCTGTGAGCAGCATGGTATATGAAGCAAATGTGAGAATTCATGATCCAGTTTATGGTTGTGCTGGTGCAATCAGTAAGCTTCAGAAACAACTTAATGATCTCCAAGCAGAATTGGCCGTGACCCAAGCTGAGCTACTTATCATGCAATGCCAGCAGCAGCAACAAAATGACATCGCAAGCTTCTACGACAGAGATTTAGGTTCGGATTAG 501 0.4451 MMEYTNKTRRSLRVSTPFSFSSSSYSPSLMPSPSLPTVVQGPCAACKVLRRRCTDTCSLAPYFPPSEQLKFVIAHKVFGASNIVKALQELPESKRADAVSSMVYEANVRIHDPVYGCAGAISKLQKQLNDLQAELAVTQAELLIMQCQQQQQNDIASFYDRDLGSD* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0562 166 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Vvi13g0562 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 40 153 - -
Vvi13g0562 166 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Vvi13g0562 166 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0562 Vvi-Chr13 4961089 4962010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0562 38 164 AS2 family AT1G07900 59.574 1.22e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi13g0562 LOB 6.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0562 - - vvi:100251310 291.967