Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0561 ATGGAATACACACACAGAACTACCGCAACACTCGGAGTTTCAACTACTATTTTATCTGCTTCCTCATCTAATTCTTCTCCTTCTCCTTCTCCTTCTTCTCTTCCAACTACTGTTCAGGGTCCCTGTGCTGCCTGCAAAATCCTTCGTCGTCGATGCACTGAGAGATGTGTGTTAGCTCCATATTTTCCACCGACTGAACCACTCAAATTTGTCATTGCCCATAAGGTCTTTGGAGCTAGCAACATCGTCAAGGCCTTGCAGGAACTTCCCGAGTCCAAGAGAGCGGATGCAGTAAGCAGCATGGTATATGAAGCCTATGCGAGAAATCGTGATCCAGTCTATGGTTGTGCTGGTGCAATTAGTCACCTTCAGAAACAACTTAATGATCTCCAAGCAGAATTGGCTATGACACAAGCGGCGCTCCTTCTCATACAATGCCAACAACATGAACAAAATCATGAGAATACAGCCATCTTTGATCAGGACAAATATTTCAGCTCCGTCTTGGAGCCTTCTTGGCAATGA 525 0.4514 MEYTHRTTATLGVSTTILSASSSNSSPSPSPSSLPTTVQGPCAACKILRRRCTERCVLAPYFPPTEPLKFVIAHKVFGASNIVKALQELPESKRADAVSSMVYEAYARNRDPVYGCAGAISHLQKQLNDLQAELAMTQAALLLIQCQQHEQNHENTAIFDQDKYFSSVLEPSWQ* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0561 174 MobiDBLite consensus disorder prediction 18 38 - -
Vvi13g0561 174 Pfam Lateral organ boundaries (LOB) domain 41 138 IPR004883 -
Vvi13g0561 174 Coils Coil 120 140 - -
Vvi13g0561 174 ProSiteProfiles LOB domain profile. 40 141 IPR004883 -
Vvi13g0561 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 39 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0561 Vvi-Chr13 4938170 4938957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0561 37 148 AS2 family AT2G28500 72.321 9.66e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi13g0561 LOB 4.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0561 - - vvi:100246173 333.183