Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0559 ATGGAATACACCGACCCAACTACAACTGGGTCAACCATTCCCTCTTCTTCTTCAAGCCTTGCTCCTTCTCTTCCAACAGCTGTTCAACGTCCATGTGCTGCCTGCAAGATCCTTCGGCGTCGGTGCACCGACAGATGTGTGTTAGCTCCATATTTTCCACCCACTGAACCCTTCAATTTCATCATTGCTCATAGGGTTTTTGGAGCTAGCAACATCATCAAGTCCGTGCAGGACCTCCCGGAGTCGAGAAGAGCAGATGCAGTGAGCAGCATGATTTATGAAGCAAATGTTAGAATGTGTGATCCGGTCTATGGGTGTGCTGGTGCAATTAGTCAGCTCCATAAACAACTGTGTGATCTCCAAACAGAATTGGCTGCCACACAAGCCGAGCTCGCTATCGTGCAATGCCAGCAACAGCAACTAAATGAGAGTGTGATCTTCCTCGATGGCAGCAATTCAGCCTCAGCTTGGGAATCTCACTGGAATTAG 489 0.4867 MEYTDPTTTGSTIPSSSSSLAPSLPTAVQRPCAACKILRRRCTDRCVLAPYFPPTEPFNFIIAHRVFGASNIIKSVQDLPESRRADAVSSMIYEANVRMCDPVYGCAGAISQLHKQLCDLQTELAATQAELAIVQCQQQQLNESVIFLDGSNSASAWESHWN* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0559 162 ProSiteProfiles LOB domain profile. 30 131 IPR004883 -
Vvi13g0559 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 29 143 - -
Vvi13g0559 162 MobiDBLite consensus disorder prediction 1 24 - -
Vvi13g0559 162 Pfam Lateral organ boundaries (LOB) domain 31 128 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0559 Vvi-Chr13 4909976 4910671 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0559 28 149 AS2 family AT2G28500 64.754 5.31e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi13g0559 LOB 6.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0559 - - vvi:100247937 301.597