Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0558 ATGGAATACACCGACCCAACCACAACTGGTTCAACCATTGATCCCTCCTCTTCTTCAAGGCTTGCTGCTTCTCTTCCAACAGCTGTTAAGGGTCCATGCGCTGCCTGCAAGATCCTTCGGCGTCGGTGCACCGACAAAGGCATGTTAGCTCCATATTTTCCACCCACTGAAACCCTCAAATTCATCATTGCCCATAAAGTTTTTGGAGCTAGCAACATCGTCAAGTCCTTGCAGGAACTTCCGGAGTCGATGAGAGCAGATGCAGTGAGCAGCATGGTTTATGAAGCAAAAGCTAGAATTCGTGATCCGGTCTATGGGTGTGCTGGTGCAATTAATCAGCTCCAAAAAGAACTGCGAGATCTCCAAACAGAATTGGCTGCCACACAAGCCGATCTCGCTATCATTCGATGCCAGCAACAGCAACTACAACTAAATGACAGTATGAGCTTCCCCGAACAAAGCAATTTAGGCTCACCTTGGGAATCTTACTGGAATTAG 498 0.4759 MEYTDPTTTGSTIDPSSSSRLAASLPTAVKGPCAACKILRRRCTDKGMLAPYFPPTETLKFIIAHKVFGASNIVKSLQELPESMRADAVSSMVYEAKARIRDPVYGCAGAINQLQKELRDLQTELAATQADLAIIRCQQQQLQLNDSMSFPEQSNLGSPWESYWN* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0558 165 ProSiteProfiles LOB domain profile. 31 132 IPR004883 -
Vvi13g0558 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 31 149 - -
Vvi13g0558 165 Pfam Lateral organ boundaries (LOB) domain 32 129 IPR004883 -
Vvi13g0558 165 Coils Coil 111 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0558 Vvi-Chr13 4884446 4885208 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0558 28 157 AS2 family AT1G07900 59.155 3.14e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi13g0558 LOB 7.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0558 - - vvi:100242788 329.717