Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0557 ATGGAAAGCGCTGAGAACAACAAAGCACCGGGGACTACTGTTTCAACTCCTCTTCCGTTTTCTCCAACTTCTTCTTCTAATTCAGGTCTCCCCCGGTCTCCTCCTGCCCTTGTCGTTCTCAGCCCTTGTGCTGCCTGCAAGATCCTCCGCCGGCGATGCGCCGATAAATGTGTTTTGGCTCCATACTTTCCTCCCACCGAGCCCCTCAAATTCACCATTGCCCACAGAGTCTTCGGAGCTAGCAACATTATCAAGCTCTTGCAGGATCTCCCGGAATCCCAGAGAGCGGATGCTGTGAGCAGCATGGTGTATGAAGCAAATGCGAGAATTCGGGACCCCGTGTATGGATGTGCTGGCGCAATTTGTCACCTTCAGAAACAAGTGAGTGAGCTGCAGGCACAATTGGCTAAGGCCCAAGCGGATGTCATCAACATGCAATGCCAGCAAGACAACTTAGTGGCCATACTTTGCATGGACTTTCAGCAGCAGCAGCAGCAGCCACAATATCAGCAGCAACAACAACAACCATTTGAGTTCAATGGGAGCTTCTTCCTTGAGGATGGCAATCTTGTCATGGAGCCTCTGTGGACATGA 594 0.5135 MESAENNKAPGTTVSTPLPFSPTSSSNSGLPRSPPALVVLSPCAACKILRRRCADKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSMVYEANARIRDPVYGCAGAICHLQKQVSELQAQLAKAQADVINMQCQQDNLVAILCMDFQQQQQQPQYQQQQQQPFEFNGSFFLEDGNLVMEPLWT* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0557 197 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Vvi13g0557 197 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Vvi13g0557 197 Coils Coil 128 148 - -
Vvi13g0557 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 41 172 - -
Vvi13g0557 197 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0557 Vvi-Chr13 4853545 4854800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0557 38 197 AS2 family AT1G07900 68.675 1.55e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi13g0557 LOB 2.8e-41 No_clan