Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0552 ATGGGTTCAGAGACATTCCTAGAAATCATCCTCGCCATCCTCCTCCCTCCTGTCGGCGTCTTCCTCCGCTATGGCTGTGGAATAGAGTTCTGGATAGACTTGTTGCTGACAATCTTGGGATATATACCTGGAATTATATACGCAATTTATGTGTTGGTTGGGTAG 165 0.4606 MGSETFLEIILAILLPPVGVFLRYGCGIEFWIDLLLTILGYIPGIIYAIYVLVG* 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0552 54 PANTHER HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED 2 53 IPR000612 GO:0016020
Vvi13g0552 54 Pfam Proteolipid membrane potential modulator 6 53 IPR000612 GO:0016020
Vvi13g0552 54 ProSitePatterns Uncharacterized protein family UPF0057 signature. 10 25 IPR000612 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0552 Vvi-Chr13 4801282 4801535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0552 1 54 RCI2 Gene Family AT2G38905 96.296 4.10e-30 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0552 - - vvi:100247965 111.694