Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0548 ATGACGATGAGCAACGCCATCGGACAGTTCGGCGACACCACGCTTACCAAAGTGTTTGTTGGCGGCTTGGCATGGGAGACTCCCAAAGAGGCCATGAGAGACCATTTCGAGAAGTATGGTGAGATCTTGGAGGCCGTCATCATCTCCGATAAGCTCACCGGCAGATCCAAGGGCTACGGTTTCGTGACGTTTAAGGAGCCGGAGGCGGCGAAGAAGGCCTGCGAGGACGCCACGCCGATGATCAACGGCCGCCGAGCCAACTGCAATCTGGCTTCTCTTGGAGCGCGACGCCCGAGGTCGGCTGCCTCCAGTACACCACCTCACCAAGGATCTAACGGTGGATCGAGGCCCACGTCAGCTGCACCTGCTAGTCACGTGCAGTGGTACTATCCGGCCGGAACGCCGGCTCCCCCCTTCCATCACCAGCATCATCAGGCTGTTCCTTTTTATGGGTACTCCCCCGCCTACATTGCGGCCGACATCAGTTACAATCATAAGCTAAGCTACACAGGTGGTTCGTACATGAACGGGCATTTCTCGCAGGTGTATCCAGGGCAGGCTATGGTGGGTGCGAACGCATTGATGCCAATGTACCCTTTCTATCATTTTCATCAATCACAGACGATGGGGCATCCAGCTCACATGTTTCCACCAACGACGGTGGGCCCAATGCCCACCGTCCCAGCGATCATCTCAAAGCCCACATCAATGGCTCCCAACACAGGGCCAGGCTTTATAATCTTTTTCAAGCAAACGGGTACCCTCAAATCTGATAATGGAAGCTGCAAATAA 792 0.5518 MTMSNAIGQFGDTTLTKVFVGGLAWETPKEAMRDHFEKYGEILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACEDATPMINGRRANCNLASLGARRPRSAASSTPPHQGSNGGSRPTSAAPASHVQWYYPAGTPAPPFHHQHHQAVPFYGYSPAYIAADISYNHKLSYTGGSYMNGHFSQVYPGQAMVGANALMPMYPFYHFHQSQTMGHPAHMFPPTTVGPMPTVPAIISKPTSMAPNTGPGFIIFFKQTGTLKSDNGSCK* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0548 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Vvi13g0548 263 MobiDBLite consensus disorder prediction 95 121 - -
Vvi13g0548 263 MobiDBLite consensus disorder prediction 98 121 - -
Vvi13g0548 263 PANTHER BOULE-RELATED 7 228 - -
Vvi13g0548 263 FunFam Putative RNA-binding protein ARP1 10 99 - -
Vvi13g0548 263 Gene3D - 6 107 IPR012677 -
Vvi13g0548 263 SUPERFAMILY RNA-binding domain, RBD 12 115 IPR035979 GO:0003676
Vvi13g0548 263 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vvi13g0548 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0548 Vvi-Chr13 4762720 4764080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0548 12 156 C2H2 Transcription Factor Family AT2G19380 32.680 8.12e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0548 - - vri:117927675 532.332