Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0547 ATGGCAGATGGTCCGGCGAGTCCCCCCGGAGGCAGCCACGAAAGCGGCGGGGACCAGAGCCCCCGCCACAACGTTCGTGAGCAGGACCGGTACCTTCCGATCGCCAACATCAGCCGCATCATGAAGAAGGCGTTGCCGGCTAATGGTAAGATCGCCAAGGATGCGAAGGACACTGTCCAAGAGTGCGTCTCCGAGTTCATCAGTTTCATCACCAGCGAGGCTAGTGATAAGTGTCAGAAAGAGAAGCGAAAGACGATTAATGGTGATGATCTGCTTTGGGCGATGGCGACCCTAGGATTTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAGGTAATAATTCTTCTGGTTTTAGTTATCATTGATTGGTTATGA 390 0.5103 MADGPASPPGGSHESGGDQSPRHNVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLQRYREVIILLVLVIIDWL* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0547 129 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi13g0547 129 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi13g0547 129 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Vvi13g0547 129 MobiDBLite consensus disorder prediction 1 27 - -
Vvi13g0547 129 SUPERFAMILY Histone-fold 28 117 IPR009072 GO:0046982
Vvi13g0547 129 FunFam Nuclear transcription factor Y subunit B-3 20 119 - -
Vvi13g0547 129 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Vvi13g0547 129 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Vvi13g0547 129 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Vvi13g0547 129 Gene3D Histone, subunit A 19 118 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0547 Vvi-Chr13 4753121 4753820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0547 1 117 CCAAT-HAP3 Transcription Factor Family AT2G37060 83.333 5.03e-70 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vvi13g0547 CBFD_NFYB_HMF 2.9e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0547 K08065 - vvi:100259924 238.81