LGRPv2

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi13g0547	ATGGCAGATGGTCCGGCGAGTCCCCCCGGAGGCAGCCACGAAAGCGGCGGGGACCAGAGCCCCCGCCACAACGTTCGTGAGCAGGACCGGTACCTTCCGATCGCCAACATCAGCCGCATCATGAAGAAGGCGTTGCCGGCTAATGGTAAGATCGCCAAGGATGCGAAGGACACTGTCCAAGAGTGCGTCTCCGAGTTCATCAGTTTCATCACCAGCGAGGCTAGTGATAAGTGTCAGAAAGAGAAGCGAAAGACGATTAATGGTGATGATCTGCTTTGGGCGATGGCGACCCTAGGATTTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAGGTAATAATTCTTCTGGTTTTAGTTATCATTGATTGGTTATGA	390	0.5103	MADGPASPPGGSHESGGDQSPRHNVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLQRYREVIILLVLVIIDWL*	130

Showing 1 to 1 of 1 entries

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vvi13g0547	129	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	17	116	IPR027113	GO:0001228\|GO:0006355\|GO:0016602
Vvi13g0547	129	ProSitePatterns	NF-YB/HAP3 subunit signature.	62	78	IPR003956	GO:0005634\|GO:0006355\|GO:0043565
Vvi13g0547	129	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	31	95	IPR003958	-
Vvi13g0547	129	MobiDBLite	consensus disorder prediction	1	27	-	-
Vvi13g0547	129	SUPERFAMILY	Histone-fold	28	117	IPR009072	GO:0046982
Vvi13g0547	129	FunFam	Nuclear transcription factor Y subunit B-3	20	119	-	-
Vvi13g0547	129	PRINTS	CCAAT-binding transcription factor subunit A signature	59	77	-	-
Vvi13g0547	129	PRINTS	CCAAT-binding transcription factor subunit A signature	78	96	-	-
Vvi13g0547	129	PRINTS	CCAAT-binding transcription factor subunit A signature	97	115	-	-
Vvi13g0547	129	Gene3D	Histone, subunit A	19	118	IPR009072	GO:0046982

Showing 1 to 10 of 10 entries

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi13g0547	Vvi-Chr13	4753121	4753820	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi13g0547	1	117	CCAAT-HAP3 Transcription Factor Family	AT2G37060	83.333	5.03e-70	206

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YB	Vvi13g0547		CBFD_NFYB_HMF	2.9e-28	CL0012

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi13g0547	K08065		-	vvi:100259924	238.81

Showing 1 to 1 of 1 entries