Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0542 ATGTGGGATCTTAATGTTGAATCTGGTTGTGATGAGGATGAGAGGATGATAGTGGTGGTGGTGGAAAAGGGGGAGGAGGAGGAGCTGGTTCCGGGGGGGTGTAGGAGCCTCATGGAGGATTCCGGGACTTCGAATTCCTCGGTCGTCAATGCCGACGAAGCTCCCAGCAATGGCGGCGACGAGGACTCTTCTAACAACTCCTCTGCATTCAATTTCGGTATCTTGAACAAGTTAGGACGTCATGTGCCCACCTACGGCGCCGTGGAGGAGACCCCGGAGTTTGTGACCAGGCAGCTTTTTCCGGCCACCGGAGACCGAGGAGGCGGGGAGTCGGAGCTATGCTCCGGATCGTCTTCGACGTCGTTTCCGAAGCCTCAGTGGCTTAACCTCTCGTGCCCTGAACCAATTGGGCAGCAGAAGCCAAAGCAGCAGCAGCAGCAGCAACAACAACAGGTGAGGAAGAGTCGGCGAGGACCGAGGTCCCGGAGCTCGCAGTACCGTGGCGTTACGTTTTACCGGCGAACTGGTCGGTGGGAATCGCATATATGGGATTGTGGGAAGCAAGTGTATTTGGGTGGATTTGACACGGCTCATGCTGCAGCAAGAGCATATGACCGGGCCGCAATTAAGTTCCGGGGAGTGGATGCTGATATCAATTTCAGCATAAGTGATTATGAAGAAGACATGAAACAAATGAAGAACCTGAATAAAGAGGAATTCGTGCACATACTTCGTCGTCAAAGCAATGGATTCTCACGAGGGAGCTCAAAATATAGAGGTGTGACCCTTCATAAATGTGGAAGATGGGAAGCTCGAATGGGGCAATTCCTTGGGAAGAAGTATATTTATCTTGGGTTATTCGACAGCGAAATAGAAGCCGCAAGGGCATATGACAAAGCTGCTATCCGATACAATGGAAGGGAAGCGGTCACCAACTTTGTGCCAAGTACCTATGGAGAAGGGGCAATCTTAGAGGCCAATGACAGAAGCAGTGGGCACAATCTTGATTTGAACCTTGGGCTTTCTTTCCCTCCCGATGGTCCTAGGGGAAATGACACAGTTGGGAGGAGATCCATGGTTGAGGGCTCCACTTACACACTAGTTGGTGGACAACCCCGCCATAGTCTAACCACAGTATCCAAGCACCTTCCCATGATATCCGGCATATGCACTAGTTTCTTACCAATTCACGAGGAAACAGCCCTGGAGAAAAGGTTGGACGGGGTTTCTTCACCAAGATTCTCAAACTGGGCAAGGCAAGTGTATGGCCATGGTGTCAATATCCCAATCCCACTGTTGTCTACTGCAGCATCATCAGGATTCCCTTCTTGCTCCACCATTGGTCCCTCTGCAACTCTTCCACTATTAAATCCCAGGAACATTAATCCTGCCCTGCAGCCTCCTCCACAAATCTCCCCACCAACTACATCCACCACCAACAGTACAAGTTGCTTCTACAATTTTGGGAGCTCAAATCAACAGATGCAGTTTTGA 1494 0.5067 MWDLNVESGCDEDERMIVVVVEKGEEEELVPGGCRSLMEDSGTSNSSVVNADEAPSNGGDEDSSNNSSAFNFGILNKLGRHVPTYGAVEETPEFVTRQLFPATGDRGGGESELCSGSSSTSFPKPQWLNLSCPEPIGQQKPKQQQQQQQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFSISDYEEDMKQMKNLNKEEFVHILRRQSNGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAAIRYNGREAVTNFVPSTYGEGAILEANDRSSGHNLDLNLGLSFPPDGPRGNDTVGRRSMVEGSTYTLVGGQPRHSLTTVSKHLPMISGICTSFLPIHEETALEKRLDGVSSPRFSNWARQVYGHGVNIPIPLLSTAASSGFPSCSTIGPSATLPLLNPRNINPALQPPPQISPPTTSTTNSTSCFYNFGSSNQQMQF* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0542 497 FunFam AP2-like ethylene-responsive transcription factor 164 223 - -
Vvi13g0542 497 MobiDBLite consensus disorder prediction 38 65 - -
Vvi13g0542 497 ProSiteProfiles AP2/ERF domain profile. 165 221 IPR001471 GO:0003700|GO:0006355
Vvi13g0542 497 MobiDBLite consensus disorder prediction 112 154 - -
Vvi13g0542 497 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 96 346 - -
Vvi13g0542 497 ProSiteProfiles AP2/ERF domain profile. 257 314 IPR001471 GO:0003700|GO:0006355
Vvi13g0542 497 SMART rav1_2 257 320 IPR001471 GO:0003700|GO:0006355
Vvi13g0542 497 SMART rav1_2 165 227 IPR001471 GO:0003700|GO:0006355
Vvi13g0542 497 Gene3D AP2/ERF domain 256 315 IPR036955 GO:0003700|GO:0006355
Vvi13g0542 497 Gene3D AP2/ERF domain 164 223 IPR036955 GO:0003700|GO:0006355
Vvi13g0542 497 CDD AP2 165 223 IPR001471 GO:0003700|GO:0006355
Vvi13g0542 497 MobiDBLite consensus disorder prediction 100 166 - -
Vvi13g0542 497 CDD AP2 256 313 IPR001471 GO:0003700|GO:0006355
Vvi13g0542 497 MobiDBLite consensus disorder prediction 33 65 - -
Vvi13g0542 497 Pfam AP2 domain 256 306 IPR001471 GO:0003700|GO:0006355
Vvi13g0542 497 Pfam AP2 domain 165 213 IPR001471 GO:0003700|GO:0006355
Vvi13g0542 497 SUPERFAMILY DNA-binding domain 256 314 IPR016177 GO:0003677
Vvi13g0542 497 SUPERFAMILY DNA-binding domain 164 222 IPR016177 GO:0003677
Vvi13g0542 497 PRINTS Ethylene responsive element binding protein signature 296 316 IPR001471 GO:0003700|GO:0006355
Vvi13g0542 497 PRINTS Ethylene responsive element binding protein signature 258 269 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0542 Vvi-Chr13 4720263 4723650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0542 94 342 AP2-EREBP Transcription Factor Family AT4G36920 65.909 1.23e-94 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vvi13g0542 AP2 4.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0542 K09284 - vvi:100263240 915.605