Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0537 ATGCCTCCTAAGCAGCAATCCAAGGCCGACTTAGCGAAGAAGCAGAAAGTCGTCGAAGATAAAACATTTGGCCTCAAGAATAAGAACAAGAGTAAAAATGTTCAGAAATACGTTCAAACCCTCCAACAATCGATCCAGTCTAAGCCCGACGCTTCAAAAATCGCCGCTAAGAAGAAGAAGGAGGAAGAGAGGGCAAGAGATAAGGAGCTGAATGATTTGTTCAAGATTGCTGTTAGTCAGCCCAAAGTGCCAGTTGGTGTTGATCCCAAGTCTATATTATGCGAATTTTACAAAGTGGGTCAGTGTGCCAAGGGATTTAAATGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAGGGCGAGAAGATTGACATTTACAGCGACCAGCGTGACGAAGAAACAATGGAGGACTGGGATCAAGAGACACTTGAGAAAGTCGTGGAGTCGAAAAAGAAGGAATATAACCAGAATAAGCCTACTGAGATTGTTTGCAAATATTTTTTGGAAGCAGTGGAGAAGAAGCAGTATGGATGGTTCTGGGCTTGCCCAAATGGTGGCAAGGATTGTCACTATAGACATGCTCTTCCTCCGGGATATGTATTAAAATCTCAGATGAAGGCACTTTTAGAGGAAGAGACTGACAAAATATCTATCGAGGAAGAAATTGAAAATCAGCGTGGAAAATTAACAAAGTCAACTCCAATGACTCCTGAGCTGTTCTTTGAATGGAAGAGGAAAAGGATGGAAGAAAGAGAAGCTGGTTTGGCTGCCCAACGAGCAGAGAGGGCTAAGAATGACCGGATGAGGTATTCTTCTCCTGTATGCCCGCATTCAATTGGATAG 843 0.4294 MPPKQQSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQTLQQSIQSKPDASKIAAKKKKEEERARDKELNDLFKIAVSQPKVPVGVDPKSILCEFYKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDQRDEETMEDWDQETLEKVVESKKKEYNQNKPTEIVCKYFLEAVEKKQYGWFWACPNGGKDCHYRHALPPGYVLKSQMKALLEEETDKISIEEEIENQRGKLTKSTPMTPELFFEWKRKRMEEREAGLAAQRAERAKNDRMRYSSPVCPHSIG* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0537 280 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Vvi13g0537 280 Gene3D - 202 271 - -
Vvi13g0537 280 MobiDBLite consensus disorder prediction 254 280 - -
Vvi13g0537 280 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Vvi13g0537 280 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Vvi13g0537 280 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 268 - -
Vvi13g0537 280 MobiDBLite consensus disorder prediction 254 268 - -
Vvi13g0537 280 Pfam DRG Family Regulatory Proteins, Tma46 215 264 IPR032378 -
Vvi13g0537 280 MobiDBLite consensus disorder prediction 42 63 - -
Vvi13g0537 280 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Vvi13g0537 280 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Vvi13g0537 280 Gene3D - 87 199 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi13g0537 DFRP_C 5.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0537 - - vvi:100263325 541.962