Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0534 ATGGACGAGGCTATGTCAGGCTTTGTTATTAAAGCTGGTGGAGGTGGCTGCGGCAATGGCGGTGGTGGAACCAAGTGTGGGCGTTGGAATCCGACTACTGAACAGGTTAAAGTTCTGACTGATCTGTTCAGGTCTGGACTCCGAACGCCGAGCACTGACCAGATTCAGAAGATCTCATCCCAGCTGAGCTTTTACGGCAAGATCGAGAGCAAAAACGTCTTTTACTGGTTCCAGAACCACAAAGCCAGGGAAAGGCAGAAGCGCCGCAGAGTCTCCGTTGATGAAAGCGACGCCGTTCGTCCAGATGACAAGATCTCATTTATAAAGCGTGCGTTGGCACCAAGCCTTTCCGGTTGGTTCTCAGGAATCTCAACTTTATCTGAGAAGAAAGACGAAAAACAAAACAAAATCCTTCAACACAGTTGA 426 0.4883 MDEAMSGFVIKAGGGGCGNGGGGTKCGRWNPTTEQVKVLTDLFRSGLRTPSTDQIQKISSQLSFYGKIESKNVFYWFQNHKARERQKRRRVSVDESDAVRPDDKISFIKRALAPSLSGWFSGISTLSEKKDEKQNKILQHS* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0534 141 SMART HOX_1 24 91 IPR001356 GO:0003677
Vvi13g0534 141 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Vvi13g0534 141 FunFam WUSCHEL-related homeobox 11 25 93 - -
Vvi13g0534 141 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Vvi13g0534 141 Gene3D - 25 92 - -
Vvi13g0534 141 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 15 100 IPR044555 GO:0003700|GO:0099402
Vvi13g0534 141 SUPERFAMILY Homeodomain-like 27 89 IPR009057 -
Vvi13g0534 141 CDD homeodomain 28 88 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0534 Vvi-Chr13 4546379 4546804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0534 16 94 Wox Gene Family AT3G11260 83.544 3.75e-48 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vvi13g0534 Homeodomain 1.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0534 - - vvi:100258187 223.016