Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0532 ATGAGGCCTGATTCAGTGACTATCGTCTCGAACTGCACTGTAATTCCTGAGAAGAAATCGAGCCTTGGAGATCTCAAACTGTCGGCCTCCGATCTCCCAATGCTCTCTTGCCATTACATTCAGAAGGGGGGCCTCTTTACTCGTCCTCCTTTCCCAATTGATGCTCTCCTCGCTCTTCTCAAGCGCGCACTTTCTTCTACTCTGGTGCATTTTCCGCCACTCGCCGGCCGTTTGATCACCGACGCCCATGGTTACGTCTACATCACTTGCAATGACGCCGGCGTTGATTTCATTCACGCCAATGCCGGGCATATATTCATTCGAGACCTTTTGTCTCCCATCCATGTTCCAGACTCCTTCAAGGAGTTCTTCGCATTCGATAGAACTGTTAGCTATGATGGCCATTTCAAACCGATTATGGCGGTGCAGGTGACTGAACTAGCCGACGGAGTCTTCATCGGTTGTGCAGTTAACCATGCTGTCACCGATGGGACGTCTTTTTGGAACTTCTTCAATACGTTTGCGGATTTGTCCAGGGGGCTAAAGAGAATTTCGAGGGCTCCGTGCTTTGAGCGGAAATCGGTGCTGATTTCGCAGGCAGTGCTGATGGTTCCCCAAGGAGGTCCCAAGGTAACCTTCTCCGGCGATGCACCGCTAGCCGAGAGAATCTTTAGCTTCAGTAGAGAAGCGATTCTGAAGCTTAAATCAAAGGTGAACAATCATCAATCATCGTGCATCGGAGAAATTGACGCCATTGAAATACTGGGAAAGCAAAGCAACGATCCTTGGAAGCCGGACCAGAAAGCAAGCGGAAAGGTCACATCAGTTTTGGAGAACTGGCTAAAAAACGCCGTCGCCGTCTCAAAACCCCAAACTGATTGTCCAAATCAGACAGTGGAAATCTCATCGTTCCAGTCCCTCTCAGCGCTTCTATGGCGCGCCGTGACGCGAGCTAGAAAGTTCCATCCCTCCAAAACGACGACGTTCCGGATGGCGGTGAACGTCCGCCACCGCCTGGAGCCAAAGCTGGACCCGCTCTACTTCGGCAACGCGATTCAGAGCATCCCAACCTACGCCTCCGCTGGCGACGTCTTGTCTCGGGATCTGAGATGGTGCGCTGAACAGCTCAACAGCAACGTCAAGGCTCACAACGACGATATGGTGCGCAAGTTCATAGGGGATTGGGAGAGCAGCCCAAAGTGTTTCCCACTCGGGAACTTCGACGGCGCAATGATCACGATGGGCAGTTCTCCACGATTCCCGATGTACGATAACGATTTCGGGTGGGGCAGACCCATGGCCATTCGGGGCGGGCGGGCCAACAAATTCGACGGCAAGATTTCCGCCTTTCCCGGACGTGAGGGTGGGGGGAGCGTTGATCTGGAGGTGGTCTTGTCGCCCGAAACCATGGCGGGTCTTGAATCCGATTCGGAGTTCATGCAGTACGTAACGGGTTGTGCGTGA 1464 0.5301 MRPDSVTIVSNCTVIPEKKSSLGDLKLSASDLPMLSCHYIQKGGLFTRPPFPIDALLALLKRALSSTLVHFPPLAGRLITDAHGYVYITCNDAGVDFIHANAGHIFIRDLLSPIHVPDSFKEFFAFDRTVSYDGHFKPIMAVQVTELADGVFIGCAVNHAVTDGTSFWNFFNTFADLSRGLKRISRAPCFERKSVLISQAVLMVPQGGPKVTFSGDAPLAERIFSFSREAILKLKSKVNNHQSSCIGEIDAIEILGKQSNDPWKPDQKASGKVTSVLENWLKNAVAVSKPQTDCPNQTVEISSFQSLSALLWRAVTRARKFHPSKTTTFRMAVNVRHRLEPKLDPLYFGNAIQSIPTYASAGDVLSRDLRWCAEQLNSNVKAHNDDMVRKFIGDWESSPKCFPLGNFDGAMITMGSSPRFPMYDNDFGWGRPMAIRGGRANKFDGKISAFPGREGGGSVDLEVVLSPETMAGLESDSEFMQYVTGCA* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0532 487 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 481 - -
Vvi13g0532 487 Pfam Transferase family 5 480 - -
Vvi13g0532 487 SUPERFAMILY CoA-dependent acyltransferases 37 180 - -
Vvi13g0532 487 Gene3D - 217 480 IPR023213 -
Vvi13g0532 487 Gene3D - 6 203 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0532 Vvi-Chr13 4509785 4511248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0532 59 474 Monolignol Biosynthesis Gene Families AT5G48930 26.005 3.67e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0532 - - vvi:100247932 987.638