Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0530 ATGTCCGACGCTTTGATCAACGGGCTAGCCGGAGCCGGAGGCGGAATCATCGCTCAGCTCCTCACATATCCTCTCCAAACTGTATCTCTTCACCATGTAAATACTCGTCAACAAACGGAGCGCGATCCGAAGAGAGAGAAGAGGAAGCTTGGGACTATTGGACAAATGTATCAGGTTGTAAAGCATGAAGGATGGGATCGGCTGTACGGAGGGTTAACGCCGTCGCTGGTCGGTACGGCTGCATCTCAGGGCGTTTACTATTATTTTTATCAAATATTCAGGAACAAGGCAGAAGCTAGTGCGCTTGAACGCATGAAGAATGGGATTGGTGATGGATCAGTCGGAATGTTCTCATCGCTCGTGGTGGCTGCTTTATCTGGGTGCGTGAATGTGCTATTGACCAACCCTATTTGGGTCATTGTTACTCGCATGCAGACTCACACAAAAATCTCAAAGCAGTCCAAGCCTATTTATAGTCCAGCAGTTGCTGCAAATGAAGCAGCTGTTTCTGCAATCGAGCCTACTCCTTATGGAACTAGCCATGCGATTCAAGAAGTCTATGGTGAAGCTGGAGTTCGGGGTTTCTGGAAAGGTGTATTACCCACATTGATCATGGTGAGCAATCCTTCCATACAATTCATGTTGTATGAAACAATGTTGAAGAAGCTGAGGAAGAGACGTGCCTCACAAAAGAAGGATAGTGGTGGAATAACTGCTTCGGAGATATTTCTTCTTGGAGCTTTGGCTAAACTTGGAGCTACAGTTGTGACATATCCTCTTTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAAGTTGCCGGGGGTGACAAAAGGCATCATTATAAAGGCACATGTGATGCGATTGGGAAGATGATTCACTATGAAGGTTTTGCTGGCTTTTACAAAGGGATGAACACAAAAATTGTGCAAAGTGTTCTTGCAGCAGCTGTTTTATTCATGGTTAAGGAAGAACTTGTGAGAGGGGTTCGATTGTTGTTGTCTAAGAAGGTCACTAATACAGTTAGATAG 1029 0.4519 MSDALINGLAGAGGGIIAQLLTYPLQTVSLHHVNTRQQTERDPKREKRKLGTIGQMYQVVKHEGWDRLYGGLTPSLVGTAASQGVYYYFYQIFRNKAEASALERMKNGIGDGSVGMFSSLVVAALSGCVNVLLTNPIWVIVTRMQTHTKISKQSKPIYSPAVAANEAAVSAIEPTPYGTSHAIQEVYGEAGVRGFWKGVLPTLIMVSNPSIQFMLYETMLKKLRKRRASQKKDSGGITASEIFLLGALAKLGATVVTYPLLVVKSRLQAKQVAGGDKRHHYKGTCDAIGKMIHYEGFAGFYKGMNTKIVQSVLAAAVLFMVKEELVRGVRLLLSKKVTNTVR* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0530 342 Pfam Mitochondrial carrier protein 241 327 IPR018108 -
Vvi13g0530 342 Pfam Mitochondrial carrier protein 7 95 IPR018108 -
Vvi13g0530 342 Pfam Mitochondrial carrier protein 114 225 IPR018108 -
Vvi13g0530 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 96 IPR018108 -
Vvi13g0530 342 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 333 IPR044712 GO:0006862|GO:0055085
Vvi13g0530 342 SUPERFAMILY Mitochondrial carrier 3 324 IPR023395 -
Vvi13g0530 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 241 328 IPR018108 -
Vvi13g0530 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 114 222 IPR018108 -
Vvi13g0530 342 Gene3D Mitochondrial carrier domain 6 332 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0530 Vvi-Chr13 4454789 4466436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0530 53 330 Chloroplast and Mitochondria Gene Families AT1G25380 26.165 3.18e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0530 K13354 - vvi:100261501 634.024