Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0526 ATGGAAACTCTCTATCCAGCTTCGCATATATCGACTTCGAATTGGTGGTTGCAGGACAGCAACAGCACCCTATGGACTAAAGAAGAGAATAAGAGGTTTGAGAGAGCTCTTGCTATTTATGATGAGAACTCTCCGGATCGGTGGTTGAAGGTGGCGGAAATGATCCCAGGGAAGACTGTGTGGGATGTGATACAGCAGTACAAGATACTGGAAGAAGATGTCAACGATATAGAAGCAGGGATGTTTCCAATTCGTGGCTACCTTGCCCCTTCTTTTACACTGGAGTTGGTTGAGAATCGTGGCTTGGATGCGTTAAGAAAGAGGACCGCCACTATGGTTCGAGCTTCTGATCAGGAGAGGAAGAAAGGGGTTCCATGGACAGAAGATGAGCACAGGCGATTTCTGATGGGTCTTATAAAGCATGGTAAGGGAGACTGGAGAAACATATCCCGGAATTTTGTAGTATCTAAGACGCCTACTCAAGTAGCCAGCCATGCCCAGAAATACTTCGCTAGGCAGCTTTCAGGAGGGAAAGATAAGAGGAGGCCGAGCATCCACGACATCACAACGGTCAATCTGACCGACACTACTCCCCCAGAGAACAATAAATCTCCTTCATTGCATCACTCAACTGCACTTCAGTCGCAGCAGAAGTCCACTGGTGCTCCAAAAGTAATACTGGACTGGGATCATTCCAATGATGGAGCCCTCATGGTATTCAATTCGACTCATGGCAATTTGTTCATGCCATCGCCATATGAAGTTGCTTCGTTCGGTACCCATCATGGAGCTCATATTGTACCTCGCAATCCAGTGTTTCAAATCCAATCTGCAAGACATCAAGTTCGTGGATGA 855 0.4678 METLYPASHISTSNWWLQDSNSTLWTKEENKRFERALAIYDENSPDRWLKVAEMIPGKTVWDVIQQYKILEEDVNDIEAGMFPIRGYLAPSFTLELVENRGLDALRKRTATMVRASDQERKKGVPWTEDEHRRFLMGLIKHGKGDWRNISRNFVVSKTPTQVASHAQKYFARQLSGGKDKRRPSIHDITTVNLTDTTPPENNKSPSLHHSTALQSQQKSTGAPKVILDWDHSNDGALMVFNSTHGNLFMPSPYEVASFGTHHGAHIVPRNPVFQIQSARHQVRG* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0526 284 CDD SANT 25 68 IPR001005 -
Vvi13g0526 284 CDD SANT 125 170 IPR001005 -
Vvi13g0526 284 Gene3D - 124 174 - -
Vvi13g0526 284 Gene3D - 18 84 - -
Vvi13g0526 284 MobiDBLite consensus disorder prediction 174 220 - -
Vvi13g0526 284 SUPERFAMILY Homeodomain-like 23 78 IPR009057 -
Vvi13g0526 284 SUPERFAMILY Homeodomain-like 119 173 IPR009057 -
Vvi13g0526 284 Pfam Myb-like DNA-binding domain 25 67 IPR001005 -
Vvi13g0526 284 Pfam Myb-like DNA-binding domain 125 170 IPR001005 -
Vvi13g0526 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 174 IPR017930 -
Vvi13g0526 284 ProSiteProfiles SANT domain profile. 25 75 IPR017884 -
Vvi13g0526 284 SMART sant 21 73 IPR001005 -
Vvi13g0526 284 SMART sant 122 172 IPR001005 -
Vvi13g0526 284 ProSiteProfiles Myb-like domain profile. 118 170 IPR001005 -
Vvi13g0526 284 ProSiteProfiles SANT domain profile. 126 174 IPR017884 -
Vvi13g0526 284 MobiDBLite consensus disorder prediction 187 220 - -
Vvi13g0526 284 FunFam transcription factor MYB1R1 124 175 - -
Vvi13g0526 284 FunFam Transcription factor SRM1 17 84 - -
Vvi13g0526 284 NCBIfam myb-like DNA-binding domain, SHAQKYF class 121 173 IPR006447 GO:0003677
Vvi13g0526 284 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 18 246 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0526 Vvi-Chr13 4403637 4404929 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi13g0526 Myb_DNA-binding 2.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0526 - - vvi:100255200 588.571