Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0513 ATGGTGAAGGGACGCCAAGGAGAGCGCGTTAGGCTTTATGTCCGAGGGACTATTCTTGGATACAAGAGGTCGAAGTCGAACCAGTATCCCAACACCTCTTTGATCCAGATCGAAGGCGTGAACACCAAGGAGGAGGTGGCGTGGTATTGCGGCAAGAGAATGGCGTACATCTACAAGGCCAAGGTGAAGAAGGACGGATCGCACTTTCGTTGCATTTGGGGCAAGGTCACCAGACCTCACGGTAACAGTGGTGTTGTCAGAGCCAAGTTCAAGTCCAATTTGCCTCCCAAGTCCATGGGAGCTAGGGTCAGGGTTTTCATGTACCCAAGCAACATATAA 339 0.5133 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRMAYIYKAKVKKDGSHFRCIWGKVTRPHGNSGVVRAKFKSNLPPKSMGARVRVFMYPSNI* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0513 112 Pfam Ribosomal protein L35Ae 12 106 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vvi13g0513 112 ProSitePatterns Ribosomal protein L35Ae signature. 74 95 IPR018266 GO:0003735|GO:0005840|GO:0006412
Vvi13g0513 112 FunFam 60S ribosomal protein L35a 7 112 - -
Vvi13g0513 112 PANTHER 60S RIBOSOMAL PROTEIN L35A 2 112 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vvi13g0513 112 Gene3D translation elongation factor selb, chain A, domain 4 6 112 IPR038661 -
Vvi13g0513 112 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 14 106 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vvi13g0513 112 SUPERFAMILY Translation proteins 12 106 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0513 Vvi-Chr13 4314238 4314966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0513 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G74270 91.964 6.58e-75 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0513 K02917 - vvi:100258134 234.572