Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0507 ATGGACCAACTCCAAGTTGATTCAGCAGCAGCCGCCCTCGTTGACGAGGAAGACGTCGTCACTGCCAACGATGCCCGCCGTGATGGTGATACAAGGGCCGGTGGGAGCAGTAGCCGAGTCAGGGGTCCCTGGTCTCCGGAAGAAGACGCAATTCTCAGTCAACTCGTCAGCAAGTTCGGCCCCCGGAATTGGAGCTTGATCGCCCGTGGAATTTCCGGTCGTTCTGGAAAGTCTTGCCGGCTTCGCTGGTGTAACCAGCTCGACCCTTGCGTCAAGCGGAAGCCCTTTACTGAGGAAGAGGATCGTATTATAATTGCAGCCCATTCACATCATGGAAATAAGTGGGCATCAATTGCAAGGCTCCTGCCAGGCAGAACAGACAATGCAATCAAGAACCACTGGAATTCTACACTAAAGCGACAGTGCAAGAAGCTTGACATGTTTAAACCAATATCTGGTAGTATGTTGGAAGATGGTAGCCCTGACAGAACAAAGGCATCCTCAGAAGAAACCATGTCGCCAGGCGATATCGACTCACGGAAGCCCCCAGAAGGAAGAGATGCGAGCTTGATGGATGATGGACCCTATCAGTGTGAAAACAAGGTTCAGACCACTGAAGATCATTCTTCCATTTCTCGTCCAATGGCACGTGTTAGTGCCTTCAGTGTTTACAACCCTCCGAGTGGCCTGAGAGTCGGATCTGCATTTTCAAGGGCGGCCCCAATGAAGGGGCCTTTGGTCCAAACCTCTAAACCACACTTGGAGGTCTGTAAATTCCTTGAAGGTGTTTACAGTGAACCCACGATCCCTTTGCAATGTGGTCACGGTTGCTGTGAGGCTCCAACTGGTGGCCAATCTCAAGGGTCTCTGTTGGGGCCTGAATTTATTGAATACATGGAACCCCCACCATTCTCTAGTCATGAATTAGCATCCATAGCTGCAGAGTTGAACAGTATTGCTTGGATCAAGAGTGGCCTTGTGAACAGCAGCAGTAGCATGCAGGACGAAACAGCCGGACAGAGGCTCTGTATGGGAGCTGCAGCACAACTGAAGAATGAGCATTTGCGACTTGAGGAGGGAAGGAACAAGCTGATGGGCATGATGCCAGAGGTGCTGCCGACCCAGATGCCTGCCTAG 1137 0.5154 MDQLQVDSAAAALVDEEDVVTANDARRDGDTRAGGSSSRVRGPWSPEEDAILSQLVSKFGPRNWSLIARGISGRSGKSCRLRWCNQLDPCVKRKPFTEEEDRIIIAAHSHHGNKWASIARLLPGRTDNAIKNHWNSTLKRQCKKLDMFKPISGSMLEDGSPDRTKASSEETMSPGDIDSRKPPEGRDASLMDDGPYQCENKVQTTEDHSSISRPMARVSAFSVYNPPSGLRVGSAFSRAAPMKGPLVQTSKPHLEVCKFLEGVYSEPTIPLQCGHGCCEAPTGGQSQGSLLGPEFIEYMEPPPFSSHELASIAAELNSIAWIKSGLVNSSSSMQDETAGQRLCMGAAAQLKNEHLRLEEGRNKLMGMMPEVLPTQMPA* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0507 378 SMART sant 92 140 IPR001005 -
Vvi13g0507 378 SMART sant 40 89 IPR001005 -
Vvi13g0507 378 MobiDBLite consensus disorder prediction 151 195 - -
Vvi13g0507 378 MobiDBLite consensus disorder prediction 174 188 - -
Vvi13g0507 378 CDD SANT 43 85 IPR001005 -
Vvi13g0507 378 MobiDBLite consensus disorder prediction 19 34 - -
Vvi13g0507 378 FunFam Transcription factor MYB44 95 141 - -
Vvi13g0507 378 SUPERFAMILY Homeodomain-like 38 134 IPR009057 -
Vvi13g0507 378 CDD SANT 95 138 IPR001005 -
Vvi13g0507 378 PANTHER MYB PROTEIN-RELATED 41 187 - -
Vvi13g0507 378 Pfam Myb-like DNA-binding domain 93 137 IPR001005 -
Vvi13g0507 378 Pfam Myb-like DNA-binding domain 41 87 IPR001005 -
Vvi13g0507 378 Gene3D - 40 92 - -
Vvi13g0507 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 87 IPR017930 -
Vvi13g0507 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Vvi13g0507 378 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Vvi13g0507 378 FunFam MYB transcription factor 41 92 - -
Vvi13g0507 378 Gene3D - 94 154 - -
Vvi13g0507 378 MobiDBLite consensus disorder prediction 17 44 - -
Vvi13g0507 378 ProSiteProfiles Myb-like domain profile. 36 87 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0507 Vvi-Chr13 4249970 4255522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0507 38 369 MYB Transcription Factor Family AT3G55730 47.578 8.54e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi13g0507 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0507 K09422 - vvi:100240975 768.074