Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0506 ATGTCGACTGTAGAGAAGCGTCATGGTGATGTAGAAGAGGGAGGTAGGCGTGGGTCCGGCGGTGTCGGTGGCTCATACGGCGATGAGGAGCAGAGGTGTTCGAGGGGGCCGGGGACGGAGATTGTTGGGGTTTCGGAAAAGGGGAGGGAATCCTCTGTGTCAGAATGTTCAGTAGACGTGGATCTGGGACGTGGGGTTCCGGAGATTAAGGTGCATTTGGCGAAAGTGGAGAGGGATTGTAGGATTTGTCACCTAAGCTTGGATTCAACGAATCAGGAGTCTGGGATTCCGATTGAACTGGGTTGTTCTTGCAAGGCCGATTTGGCTGCCGCTCATAAACAGTGTGCAGAGGCGTGGTTCAAGATTAAGGGCAACAAAATCTGTGAGATATGTGGATCAGTTGCGCGAAATGTTTCTGGTGCAAATGAGGCTGAGTTGATGGAGCAGTGGGATGACACAACTGATGTTGCAACTGCAGCAGCACCTGCACGCCCAACAGAGATCCGAAACTTCTGGCAAGGCCATAGATTCCTGAATTTCCTTCTAGCTTGTATGGTCTTCGCTTTTGTCATCTCTTGGCTTTTTCACTTCAATGTATCAGCATAA 606 0.505 MSTVEKRHGDVEEGGRRGSGGVGGSYGDEEQRCSRGPGTEIVGVSEKGRESSVSECSVDVDLGRGVPEIKVHLAKVERDCRICHLSLDSTNQESGIPIELGCSCKADLAAAHKQCAEAWFKIKGNKICEICGSVARNVSGANEAELMEQWDDTTDVATAAAPARPTEIRNFWQGHRFLNFLLACMVFAFVISWLFHFNVSA* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0506 201 SUPERFAMILY RING/U-box 77 134 - -
Vvi13g0506 201 MobiDBLite consensus disorder prediction 1 15 - -
Vvi13g0506 201 MobiDBLite consensus disorder prediction 1 47 - -
Vvi13g0506 201 PANTHER ZINC FINGER, RING-CH-TYPE 25 200 - -
Vvi13g0506 201 Pfam RING-variant domain 80 131 IPR011016 GO:0008270
Vvi13g0506 201 ProSiteProfiles Zinc finger RING-CH-type profile. 72 138 IPR011016 GO:0008270
Vvi13g0506 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 142 IPR013083 -
Vvi13g0506 201 SMART ringv_2 79 132 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0506 Vvi-Chr13 4241110 4246436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0506 24 201 C3H Transcription Factor Family AT5G05830 60.989 3.75e-72 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0506 - - jre:108991946 282.337