LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi13g0451	ATGGACGGGGTTGTGTCTGTGTTCCCAAATGGAATGAAGAAACTCCTTACCACAAGGTCATGGGACTTCATCGGCTTCCCCATGGAAGCCAATAGAACAACTACTGAAAGTGACATTATTGTTGGAATGCTGGACACTGGGATCTGGCCTGAGTCTGCTAGTTTCAGTGATGAAGGGTTTGGTCCACCACCAACCAAATGGAAGGGCACTTGTCAAACCTCATCCAATTTCACTTGCAACAATAAAATCATTGGAGCTAGATACTACAGAAGTAATGGAAAGGTACCCCCAGAAGATTTTGCATCACCAAGGGATTCAGAAGGCCATGGGACACATACTGCATCCACAGCAGCTGGAAACGTAGTTAGTGGGGCAAGCTTACTGGGCCTTGGCGCAGGAACAGCCCGAGGAGGGGCTCCTTCATCCCGCATTGCAGTGTATAAGATATGTTGGGCAGGTGGTTGTCCCTATGCTGATATCCTCGCAGCATTTGATGATGCGATTGCGGATGGAGTCGATATAATTTCTCTTTCAGTTGGGGGATTCTTTCCTCGGGACTACTTTGAAGATCCAATTGCGATTGGAGCTTTCCATTCCATGAAGAATGGGATACTCACATCTAATTCTGCTGGTAATTCGGGTCCTGATCCTGCTTCTATCACAAATTTCTCGCCTTGGTCTCTCTCAGTTGCTGCTAGCGTCATTGACAGAAAGTTTCTGACCGCGTTGCACTTAGGAAACAACATGACTTATGAGGGAGAACTCCCTCTAAATACTTTCGAGATGAATGATATGGTCCCTCTCATTTATGGTGGAGATGCGCCAAACACGTCAGCAGGATCTGATGCATCTTATTCCAGGTATTGCTACGAGGGCTCCTTGAACATGTCTCTGGTAACGGGTAAAATTGTACTCTGTGACGCGTTGAGTGATGGGGTGGGAGCAATGAGTGCTGGAGCAGTAGGTACTGTAATGCCAAGTGATGGCTACACAGATTTGTCCTTCGCTTTCCCCTTACCTACATCCTGCTTGGACTCCAACTATACTAGCGACGTTCATGAGTACATAAACTCAACTAGCACACCAACTGCGAATATACAGAAGACCACCGAGGCTAAAAATGAATTGGCACCGTTTGTAGTTTGGTTTTCGTCGAGAGGCCCAAACCCTATTACCCGTGACATTCTCAGTCCTGACATCGCCGCCCCAGGAGTCAACATTCTAGCAGCATGGACAGAAGCTTCAAGTTTGACAGGAGTTCCAGGGGATACAAGAGTAGTTCCATACAATATCATTTCAGGGACGTCCATGGCTTGTCCACATGCTTCCGGGGCTGCTGCCTACGTTAAATCATTTCACCCAACATGGTCTCCTGCTGCTATCAAGTCTGCCTTAATGACAACTGCTTCTCCCATGAGTGCTGAAAGAAACACCGACCTAGAGTTTGCTTATGGGGCAGGTCAGTTAAATCCCCTACAGGCTGCAAATCCTGGTTTGGTATATGATGTTGGTGAGGCAGATTACGTCAAGTTTTTGTGTGGGCAAGGCTATAACGATACAAAGTTGCAGCTTGTTACCGGAGAAAACATCACTTGTTCTGCAGCCACAAATGGAACTGTTTGGGATTTAAACTACCCTTCTTTTGCTGTATCTACTGAGCATGGGGCAGGAGTTACTCGCACCTTCACTAGAACTGTCACAAACGTCGGATCACCAGTCTCAACTTACAAGGCAATTGTGGTTGGCCCTCCAGAACTCAGTATCCAAGTTGAACCAGGTGTACTTTCATTCAAATCCCTTGGGGAGACACAAACCTTCACTGTCACTGTTGGTGTGGCAGCACTAAGTAACCCTGTAATATCAGGCTCTTTGGTATGGGATGATGGGGTTTACAAAGCGAGGAGCCCCATAGTCGCTTATGTATATGACTCAAGTGTCTAG	1941	0.4688	MDGVVSVFPNGMKKLLTTRSWDFIGFPMEANRTTTESDIIVGMLDTGIWPESASFSDEGFGPPPTKWKGTCQTSSNFTCNNKIIGARYYRSNGKVPPEDFASPRDSEGHGTHTASTAAGNVVSGASLLGLGAGTARGGAPSSRIAVYKICWAGGCPYADILAAFDDAIADGVDIISLSVGGFFPRDYFEDPIAIGAFHSMKNGILTSNSAGNSGPDPASITNFSPWSLSVAASVIDRKFLTALHLGNNMTYEGELPLNTFEMNDMVPLIYGGDAPNTSAGSDASYSRYCYEGSLNMSLVTGKIVLCDALSDGVGAMSAGAVGTVMPSDGYTDLSFAFPLPTSCLDSNYTSDVHEYINSTSTPTANIQKTTEAKNELAPFVVWFSSRGPNPITRDILSPDIAAPGVNILAAWTEASSLTGVPGDTRVVPYNIISGTSMACPHASGAAAYVKSFHPTWSPAAIKSALMTTASPMSAERNTDLEFAYGAGQLNPLQAANPGLVYDVGEADYVKFLCGQGYNDTKLQLVTGENITCSAATNGTVWDLNYPSFAVSTEHGAGVTRTFTRTVTNVGSPVSTYKAIVVGPPELSIQVEPGVLSFKSLGETQTFTVTVGVAALSNPVISGSLVWDDGVYKARSPIVAYVYDSSV*	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi13g0451	646	CDD	Peptidases_S8_3	13	470	IPR034197	-
	Vvi13g0451	646	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	2	638	IPR045051	-
	Vvi13g0451	646	Gene3D	-	512	642	-	-
	Vvi13g0451	646	Pfam	Subtilase family	37	487	IPR000209	GO:0006508\|GO:0008236
	Vvi13g0451	646	FunFam	Subtilisin-like protease SBT1.5	38	245	-	-
	Vvi13g0451	646	SUPERFAMILY	Subtilisin-like	15	499	IPR036852	GO:0004252\|GO:0006508
	Vvi13g0451	646	CDD	PA_subtilisin_like	245	366	-	-
	Vvi13g0451	646	MobiDBLite	consensus disorder prediction	96	116	-	-
	Vvi13g0451	646	Gene3D	Peptidase S8/S53 domain	38	508	IPR036852	GO:0004252\|GO:0006508
	Vvi13g0451	646	ProSitePatterns	Serine proteases, subtilase family, serine active site.	434	444	IPR023828	-
	Vvi13g0451	646	ProSiteProfiles	Serine proteases, subtilase domain profile.	20	495	-	-
	Vvi13g0451	646	Gene3D	-	236	373	-	-
	Vvi13g0451	646	PRINTS	Subtilisin serine protease family (S8) signature	36	55	IPR015500	-
	Vvi13g0451	646	PRINTS	Subtilisin serine protease family (S8) signature	105	118	IPR015500	-
	Vvi13g0451	646	PRINTS	Subtilisin serine protease family (S8) signature	433	449	IPR015500	-
	Vvi13g0451	646	Pfam	Fibronectin type-III domain	542	638	IPR041469	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi13g0451	Vvi-Chr13	3880920	3883469	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi13g0451	1	640	Subtilisin-like Serine Gene Family	AT5G59190	50.232	0.0	598

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi13g0451	-		-	vvi:109121473	1272.3