Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0448 ATGGGTGACCTTCCCAAAGGTCAAGTGTCTGCGTCATCCCTTCAAGCTAACATACTACAAGAAGTCACTGGCAGCAGTGGATCTGAATATCTTCTCCATAGCTACAAGAGGAGCTTCAACGGGTTTGTCGCAAGGTTGACGGAGGAGGAGTCGAAGGAACTGTCCAGCATGGACGGGGTTGTGTCAGTGTTCCCAAATGGAAAGAAGAAACTCTTCACAACTAGGTCATGGGACTTCATCGGCTTCCCCCTGGAAGCTAATAAAACAACTACTGAAAGTGACATTATTGTTGGAATGCTCGACACTGGGATCAGGCCTGAGTCTGCCAGTTTCAGTGATGAAGGATTTGGTCCACCACCAAGCAAATGGAAGGGCACTTGTCAAACCTCATCCAATTTCACTTGCAACAATAAAATCATTGGAGCTAAATACTATAGGAGTGATGGATTTATACCCTCAGTAGATTTTGCATCACCAAGAGACACAGAAGGTCATGGGACACATACTGCATCCACAGCAGCTGGAAATGTAGTTAGTGGGGCAAGCTTACTGGGCCTTGGCGCAGGAACAGCTCGAGGAGGGACTCCTTCAGCCCGCATTGCAGTGTATAAGATATGTTGGGCGGATGGTTGTTATGATGCAGATATCCTTGCAGCATTTGATGATGCAATTGCCGATGGAGTTGATATTATCTCTCTTTCAGTTGGGGGATCCTTTCCTCTGGATTACTTTGAAGATCCAATTGCGATTGGAGCTTTCCATTCTATGAAGAATGGGATACTCACATCTAATGCTGGTGGTAATTCGGGTCCAGATCCTGCATCTATTACAAATTTCTCGCCTTGGTCTCTGTCAGTTGCTGCTAGCGTCATTGACAGAAAGTTTCTGACCGCGTTGCACTTGGGAAACAACCTGACTTATGAGGGAGACCTCTCTTTAAATACTTTCGAGATGAATGATATGGTCCCTCTCATTTATGGCGGAGATGCGCCAAACACGTCAGCAGGATCTGATGCACATTATTACAGGTACTGCTTGGAAGGCTCCTTGAACGAGTCTCTGGTTACGGGTAAAATTGTACTCTGTGACGGCACACCAACTGCGAATATACAGAAGACCACCGAGGTTAAAAATGAATTGGCACCGTTTGTAGTTTGGTTTTCGTCGAGAGGCCCAAACCCTATTACCCGTGACATTCTCAGTCCTGACATCGCCGCGCCAGGAGTTGACATTCTAGCAGCATGGACAGGAGCTTCAAGTTTGACAGGAGTTCCAGGGGATACAAGAGTAGTTCCATACAATATCATTTCAGGGACGTCCATGGCTTGTCCACATGCTTCCGGGGCTGCTGCCTACGTTAAATCATTTCACCCAACATGGTCTCCTGCTGCTATCAAGTCTGCCTTAATGACAACTGCTTCTCGCTTGAGTGTTGAAACCAACACCGACCTAGAGTTTGCATATGGGGCAGGTCAGTTGAATCCCCTACTGGCTGCAAATCCTGGTTTGGTATATGATGCTGGGGAGGCAGATTACATCAAGTTTTTGTGTGGGCAAGGCTATAACACTACAAAGTTGCACCTTGTCACCGGAGAAAACATCACTTGTTCTGCAGCCACAAATGGAACTGTTTGGGATTTAAACTACCCTTCTTTTGCCGTATCTACCGATAATGGGGTAGGAGTTACTCGTACCTTCACTAGAACCGTCACAAACGTCGGATCACCAGTCTCAACTTACAAGGCAAATGTAGCTGGCCCTCCAGAACTTAGTATCCAAGTTGAACCAAGTGTACTTTCATTCAAATCCCTTGGAGAGACGCAAACGTTCACTGTCACTGTTGGTGTGGCAGCACTAAGTAGCCCTGTAATATCAGGTTCTTTGGTGTGGGATGATGGGGTTTACAAAGTGAGGAGCCCCATAGTCGCTTATGTTTATGACTTAAAGCATTAA 1953 0.4634 MGDLPKGQVSASSLQANILQEVTGSSGSEYLLHSYKRSFNGFVARLTEEESKELSSMDGVVSVFPNGKKKLFTTRSWDFIGFPLEANKTTTESDIIVGMLDTGIRPESASFSDEGFGPPPSKWKGTCQTSSNFTCNNKIIGAKYYRSDGFIPSVDFASPRDTEGHGTHTASTAAGNVVSGASLLGLGAGTARGGTPSARIAVYKICWADGCYDADILAAFDDAIADGVDIISLSVGGSFPLDYFEDPIAIGAFHSMKNGILTSNAGGNSGPDPASITNFSPWSLSVAASVIDRKFLTALHLGNNLTYEGDLSLNTFEMNDMVPLIYGGDAPNTSAGSDAHYYRYCLEGSLNESLVTGKIVLCDGTPTANIQKTTEVKNELAPFVVWFSSRGPNPITRDILSPDIAAPGVDILAAWTGASSLTGVPGDTRVVPYNIISGTSMACPHASGAAAYVKSFHPTWSPAAIKSALMTTASRLSVETNTDLEFAYGAGQLNPLLAANPGLVYDAGEADYIKFLCGQGYNTTKLHLVTGENITCSAATNGTVWDLNYPSFAVSTDNGVGVTRTFTRTVTNVGSPVSTYKANVAGPPELSIQVEPSVLSFKSLGETQTFTVTVGVAALSSPVISGSLVWDDGVYKVRSPIVAYVYDLKH* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0448 650 ProSiteProfiles Serine proteases, subtilase domain profile. 76 499 - -
Vvi13g0448 650 CDD Peptidases_S8_3 69 474 IPR034197 -
Vvi13g0448 650 Gene3D Peptidase S8/S53 domain 94 291 IPR036852 GO:0004252|GO:0006508
Vvi13g0448 650 Gene3D Peptidase S8/S53 domain 378 512 IPR036852 GO:0004252|GO:0006508
Vvi13g0448 650 CDD PA_subtilisin_like 301 378 - -
Vvi13g0448 650 FunFam Subtilisin-like protease SBT1.5 94 301 - -
Vvi13g0448 650 Pfam Subtilase family 93 491 IPR000209 GO:0006508|GO:0008236
Vvi13g0448 650 Pfam Fibronectin type-III domain 546 642 IPR041469 -
Vvi13g0448 650 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 72 IPR037045 -
Vvi13g0448 650 PRINTS Subtilisin serine protease family (S8) signature 92 111 IPR015500 -
Vvi13g0448 650 PRINTS Subtilisin serine protease family (S8) signature 437 453 IPR015500 -
Vvi13g0448 650 PRINTS Subtilisin serine protease family (S8) signature 161 174 IPR015500 -
Vvi13g0448 650 Pfam Peptidase inhibitor I9 10 68 IPR010259 -
Vvi13g0448 650 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 28 365 IPR045051 -
Vvi13g0448 650 ProSitePatterns Serine proteases, subtilase family, serine active site. 438 448 IPR023828 -
Vvi13g0448 650 SUPERFAMILY Subtilisin-like 71 503 IPR036852 GO:0004252|GO:0006508
Vvi13g0448 650 Gene3D - 516 646 - -
Vvi13g0448 650 Gene3D - 292 364 - -
Vvi13g0448 650 Gene3D - 366 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0448 Vvi-Chr13 3845043 3848534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0448 1 647 Subtilisin-like Serine Gene Family AT5G59120 47.339 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0448 - - vvi:100244417 1144.03