Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0434 ATGGCGGACAGTCATCAACCCTTCAGGCTCCCTCAGCAAAGTAAAAGAGAAAATCCCCGCCTCTTTCTTCAAAACAACCACCCACAGCTTTTCTCCACCTTCCAACATGCCCCAGTTCACCAGCTTCATTGCCCTGATCAGAACCCAAACCCTGCAGGTTTTGTTAACAGCGAAGGAGTGCATGTGGTTGGGCCCTCCTCTGCGTCTTTTTCTTTCCCTAGTTGCGGTGACCATTCTCTCTCCTCCATTCACAACGCTAAAGACTTGGACCACCGTTTCTCCTTTGGCGCTGACGCTGTGTCTTTATCTCTGGCTCCTCACCATCGCCACCAACGGTGTGCTCCTCTGGAGCTGAATGCGAAGAGATACGACGTCGTTTCCGTTCGAGGAGGAACTCCGAAGCCGAACAACGAATTGAGAAGTTCGGTTCCGCTTGGTCCTTTCACAGGCTACGCATCGATCTTGAAGCGATCCAGCTTTTTGAGCCCTGCGCAGCAGCTTTTAGACGATTTTTGTGGCGTAGGCCGTGGAGTTTCCGATTCGGCGTCATTTGATCCTCCGTTGGAAGGAAGTGGAACCGCTGAAGATCCGATCGGTTGCAGCCATGGCAGCGAGCATTTCTGGAAGAGCTCCAGGCTCGCACCGATGCTCGACGAGGTTTACAGGAGATATAAGCTTTACTGTCAGCAGATGCATTCTGTAGTTGCATCGTTTGAAACTGTTGCTGGGCTTCAAAATGCTGCTCCATACATATCTTTTGCGTTCAAAGCCATGTCAAATCATTTCAGGTACTTGAAGAATGCAATTTTGGATCAAATTCAGTTTACAGGCAAAGCTCTTGTAGGCCATAATATTGGAAAAGACGAAACTCCAAGAGTTTGGACAGCTGACCAGGGGTTTCATAGCCAAAAAGCAGTTCAGAGCTCAATGTTTCTTCAACATCCTATTTGGCGGTCCCAAAGAGGACTTCCAGATCATGCGGTAGCTGTACTCAGGGCATGGTTGTTTGAACACTTTCTACATCCTTATCCTACTGACTTGGAGAAGCAAATTTTGGCCCAACGAACAAGCCTATCAAGAAATCAGGTTTCCAACTGGTTCATCAATGCAAGAGTTAGACTATGGAAGCCAATGGTAGAAGAAATACTCACGCTTGAGACAAAGCAAGCTCAAATGGCAGCAGAGGGAGAGGCTAACAAGCCAACTGACCCCCTTCCTTCAGCAAATCCACTGCCTCTCAGGAAACCCTTTCAAAACACACCCACCCAAAAGATGGAAGATACTCAGTCTAAACGAAGTAGAAATAAACTCTCCTATATGTTCGAACAAAGAGATGAACAAACGAACTTTCCTTACAATAATTTCTCAAGCAATTACCAAATGGGTGTTAGTGGAATTGAGAAAAGTGCAAGCAAAGGCATATCTTTAGCATTGGGTCTCCACCAAAATAACAGAATTGAGTCATCTACGAGCTTTTTTCAGCCTGGAAACAAATAG 1497 0.4656 MADSHQPFRLPQQSKRENPRLFLQNNHPQLFSTFQHAPVHQLHCPDQNPNPAGFVNSEGVHVVGPSSASFSFPSCGDHSLSSIHNAKDLDHRFSFGADAVSLSLAPHHRHQRCAPLELNAKRYDVVSVRGGTPKPNNELRSSVPLGPFTGYASILKRSSFLSPAQQLLDDFCGVGRGVSDSASFDPPLEGSGTAEDPIGCSHGSEHFWKSSRLAPMLDEVYRRYKLYCQQMHSVVASFETVAGLQNAAPYISFAFKAMSNHFRYLKNAILDQIQFTGKALVGHNIGKDETPRVWTADQGFHSQKAVQSSMFLQHPIWRSQRGLPDHAVAVLRAWLFEHFLHPYPTDLEKQILAQRTSLSRNQVSNWFINARVRLWKPMVEEILTLETKQAQMAAEGEANKPTDPLPSANPLPLRKPFQNTPTQKMEDTQSKRSRNKLSYMFEQRDEQTNFPYNNFSSNYQMGVSGIEKSASKGISLALGLHQNNRIESSTSFFQPGNK* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0434 498 MobiDBLite consensus disorder prediction 393 435 - -
Vvi13g0434 498 Gene3D - 320 382 - -
Vvi13g0434 498 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 49 407 - -
Vvi13g0434 498 Pfam Homeobox KN domain 334 373 IPR008422 GO:0003677|GO:0006355
Vvi13g0434 498 SMART HOX_1 317 381 IPR001356 GO:0003677
Vvi13g0434 498 SUPERFAMILY Homeodomain-like 320 382 IPR009057 -
Vvi13g0434 498 Pfam Associated with HOX 154 269 IPR006563 -
Vvi13g0434 498 CDD homeodomain 317 378 IPR001356 GO:0003677
Vvi13g0434 498 ProSiteProfiles 'Homeobox' domain profile. 318 377 IPR001356 GO:0003677
Vvi13g0434 498 SMART prehox3 149 271 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0434 Vvi-Chr13 3701110 3705972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0434 76 481 Homeobox Transcription Factor Family AT5G02030 40.690 9.41e-77 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vvi13g0434 POX 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0434 - - vvi:100261625 1025