Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0432 ATGGCTTCTTCAGGCGTCAACCACCTCTCTCAGCCTTGCATATATGCAGGGCAGCTTGCTTCTTCTTATGCGGAGCGGAAGTCCAGGTTCATGAAATGGCTGAGTAAGCTTTTCAAGAGTGGGGGGTCGGGTCGTGGAGTTATTGGTGGACAGCATCCCCAGTTTCTCGGAGACGAAAACATGGTTTGGCGAGTACCCCCGAGATCCTTGGATGGTCGTCCTAGAAGTGATAAAGAGAAAGAGGATTTAGACCATGCAATTGCACTTTCGCTAGCTGAAGATTTGAAGAGGCCAAAGGGATATGGATGGGGTTCAGACACTGATGAAGATCTTTCTAGGTCACTGCATGATAGCCTGAATACATCCTCCTATCCTCCTTATGCTCCTACACCATATTATCCAAGTGGGTATAGAGTATGTGGAGCATGCAAACAGGATATAGGGTTTGGAAATTATTTAGGATGCATGGGAACTTTTTTTCATCCAGAGTGCTTTCGCTGTCGCTCTTGTGGTTACCCAATTACTGAGCATGAGTTTTCTTTGTCAGGGAGGGATGCATACCACAAGTCCTGTTTCAAAGAGTTGACTCATCCCAAATGTGAAGTTTGCCACCAATTTATCCCAACAAATGGTGCTGGTTTAATTGAGTACAGGTGCCACCCCTTTTGGTCCCAGAAATATTGCCCATCGCATGAGCATGATAATGTAGCTCGTTGCTGTAGCTGTGAACGCTTGGAGTCTTGGAATGCGAGATACATATCCTTGGGAGATGGACGGAGTTTATGCTTAGAGTGCATGGAATCAGCTATAATGGATACCGGTGATTGCCATTCCCTTTACCATGCAATCAGGGATTTTTTTGAAGGGATGAACATGAAACTAGATCAGGAAATTCCCATGCTTCTGGTTGAAAGACAAGCCCTTAATGAAGCTATTGTAGGAGAGAAGAATGGACACCACCACTTGCCAGAGACGAGGGGTTTGTGCCTCTCTGAAGAGCAAACTGTTAAAAGTATCCAAGTACTTAGAAGGCCCAGACTTGCAGGACAGCGACTAGTAGGAATGAGATCACAACCTCAAAAGCTGACTCGAAAATGTGAAGTTACAGCTATTCTTGTACTGTATGGCCTACCAAGGTTACTGACAGGAGCTATTCTTGCTCATGAACTGATGCATGGGTGGCTACGCCTTAAAGGCTTCCGAAATCTTAGTCCTGAGGTAGAGGAAGGTATCTGTCAGGTGCTCTCATACATGTGGCTGGAGTCAGAAGTAATGCCTGGATTTAATAGAAATATGGCATCCACATCATCAGGAGCAGCTTCCTCCTCCTCATCTTCTTCTAAAAAGGGTGGAAAATCAGAAGTAGAGAAGAAGCTGGGAGAGTTTTTCATGCACCAGATTGCACATGATGTATCCCCAGCATACGGAGAAGGATTCAGGGCGGCCAATGCTGCAGTGAATAAGTTTGGTTTGCGCATCACTCTTGACCACATTCGCTTAACAGGAAGCTTCCCTCTGTAA 1521 0.4563 MASSGVNHLSQPCIYAGQLASSYAERKSRFMKWLSKLFKSGGSGRGVIGGQHPQFLGDENMVWRVPPRSLDGRPRSDKEKEDLDHAIALSLAEDLKRPKGYGWGSDTDEDLSRSLHDSLNTSSYPPYAPTPYYPSGYRVCGACKQDIGFGNYLGCMGTFFHPECFRCRSCGYPITEHEFSLSGRDAYHKSCFKELTHPKCEVCHQFIPTNGAGLIEYRCHPFWSQKYCPSHEHDNVARCCSCERLESWNARYISLGDGRSLCLECMESAIMDTGDCHSLYHAIRDFFEGMNMKLDQEIPMLLVERQALNEAIVGEKNGHHHLPETRGLCLSEEQTVKSIQVLRRPRLAGQRLVGMRSQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGFRNLSPEVEEGICQVLSYMWLESEVMPGFNRNMASTSSGAASSSSSSSKKGGKSEVEKKLGEFFMHQIAHDVSPAYGEGFRAANAAVNKFGLRITLDHIRLTGSFPL* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0432 506 SMART lim_4 139 191 IPR001781 -
Vvi13g0432 506 CDD LIM_DA1 140 192 - -
Vvi13g0432 506 MobiDBLite consensus disorder prediction 433 449 - -
Vvi13g0432 506 Pfam Protein DA1 289 501 IPR022087 -
Vvi13g0432 506 ProSitePatterns LIM zinc-binding domain signature. 140 174 IPR001781 -
Vvi13g0432 506 MobiDBLite consensus disorder prediction 433 452 - -
Vvi13g0432 506 FunFam Protein DA1-related 2 128 193 - -
Vvi13g0432 506 Gene3D Cysteine Rich Protein 135 199 - -
Vvi13g0432 506 PANTHER PROTEIN DA1-RELATED 2 33 505 IPR045218 -
Vvi13g0432 506 ProSiteProfiles LIM domain profile. 138 198 IPR001781 -
Vvi13g0432 506 Pfam LIM domain 140 193 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0432 Vvi-Chr13 3681128 3688335 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi13g0432 DA1-like 4.8e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0432 - - vvi:100256525 1007.67