Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0431 ATGGCATCACACGGGATGGATGATGTCGTTCTCGACGATATAATCCGACGGCTCTTGGAAGTCCGATCGGCCAGGCCCGGCAAGCAGGTTCAGCTCTCTGAGAACGAGATCAAGCAACTCTGCGTTGCATCCAGGGAAATTTTTCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGGTGATATTCATGGGCAATACAGTGACTTGTTAAGGCTTTTTGAATACGGGGGGTTTCCTCCTCACACCAATTATCTATTTTTAGGGGACTATGTGGATCGTGGCAAGCAAAGCTTGGAAACAATATGCCTTTTGCTCGCCTTTAAGATTAAATATCCAGAGAACTTCTTTCTTTTAAGAGGAAATCATGAATGTGCTTCTATTAATCGGATATATGGATTTTATGATGAATGTAAGCGCCGGTTTAACGTGAGACTTTGGAAGGTTTTTACTGATTGTTTTAACTGCCTTCCAGTGGCAGCTCTTATAGATGATAAAATATTGTGCATGCATGGTGGCCTTTCCCCTGATCTGGCAAACTTGGATCAAATCAGAAATTTAACACGTCCAACTGCTATTCCTGACAGTGGTTTGCTTTGTGATCTACTCTGGTCAGATCCAGGTAGAGATGTTAAAGGATGGGGGATGAATGACAGAGGTGTCTCATTTACCTTTGGGCCTGATAAAGTGTCAGAATTCTTGACAAAACATGATTTAGACCTTGTTTGTCGTGCCCATCAGGTTGTGGAGGATGGATATGAATTCTTTGCCGATAGGCAACTTGTTACCGTATTCTCAGCTCCCAACTACTGTGGTGAATTTGATAATGCTGGTGCAATGATGATTGTAGATGAAGACTTGATGTGCTCTTTCCAAATTCTTAAGCCAGCAGAGAAGAAACCTAAGATTTTGATGTCCACAAAAATGTGA 942 0.4225 MASHGMDDVVLDDIIRRLLEVRSARPGKQVQLSENEIKQLCVASREIFLQQSNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPHTNYLFLGDYVDRGKQSLETICLLLAFKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKVFTDCFNCLPVAALIDDKILCMHGGLSPDLANLDQIRNLTRPTAIPDSGLLCDLLWSDPGRDVKGWGMNDRGVSFTFGPDKVSEFLTKHDLDLVCRAHQVVEDGYEFFADRQLVTVFSAPNYCGEFDNAGAMMIVDEDLMCSFQILKPAEKKPKILMSTKM* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0431 313 SUPERFAMILY Metallo-dependent phosphatases 22 306 IPR029052 -
Vvi13g0431 313 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 14 304 - -
Vvi13g0431 313 ProSitePatterns Serine/threonine specific protein phosphatases signature. 123 128 IPR006186 GO:0016787
Vvi13g0431 313 CDD MPP_PP1_PPKL 10 300 - -
Vvi13g0431 313 PRINTS Serine/threonine phosphatase family signature 264 280 IPR006186 GO:0016787
Vvi13g0431 313 PRINTS Serine/threonine phosphatase family signature 122 146 IPR006186 GO:0016787
Vvi13g0431 313 PRINTS Serine/threonine phosphatase family signature 60 87 IPR006186 GO:0016787
Vvi13g0431 313 PRINTS Serine/threonine phosphatase family signature 89 116 IPR006186 GO:0016787
Vvi13g0431 313 PRINTS Serine/threonine phosphatase family signature 156 182 IPR006186 GO:0016787
Vvi13g0431 313 PRINTS Serine/threonine phosphatase family signature 242 262 IPR006186 GO:0016787
Vvi13g0431 313 PRINTS Serine/threonine phosphatase family signature 185 212 IPR006186 GO:0016787
Vvi13g0431 313 SMART pp2a_7 32 302 IPR006186 GO:0016787
Vvi13g0431 313 FunFam Serine/threonine-protein phosphatase 58 311 - -
Vvi13g0431 313 Pfam Serine-threonine protein phosphatase N-terminal domain 11 58 IPR031675 -
Vvi13g0431 313 Pfam Calcineurin-like phosphoesterase 60 252 IPR004843 GO:0016787
Vvi13g0431 313 Gene3D - 3 311 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0431 Vvi-Chr13 3664787 3668177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0431 32 248 Calmodulin-binding Proteins AT5G63870 30.739 1.40e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0431 K06269 - vvi:100259840 648.277