Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0423 ATGAAGGCACTGATTCTCGTTGGGGGGTTTGGGACACGGTTGAGGCCATTGACACTCAGTGTCCCTAAGCCGCTTGTTGATTTTGCTAACAAACCCATGATCCTGCATCAGATAGAGGCTCTAAAAGCTGTTGGAGTGAGTGAAGTGGTTTTGGCCATCAATTATCAACCAGAGGTGATGTTGAACTTCCTGAAGGAATTCGAGGCAAAGCTTGGTATCACGATCACATGCTCCCAAGAGACTGAGCCACTAGGCACTGCTGGTCCTCTGGCTCTGGCTAGGGACAAACTGATAGATGATTCTGGTGAGCCATTTTTTGTGCTTAACAGTGATGTTATCAGTGAGTATCCATTCAAAGAAATGATTGAATTCCATAAAGCCCATGGAGGAGAGGCTTCCATTATGGTAACCAAGGTGGATGAACCCTCGAAGTATGGTGTGGTGGTTATGGAAGAATCAATTGGGAGAGTTGATAGATTTGTAGAAAAGCCAAAACTATTTGTCGGTAACAAGATCAATGCTGGAATTTACTTGTTGAATCCTTCTGTACTAGATCGAATTGAGCTGAGGCCCACCTCAATTGAGAAAGAGGTATTCCCAAAGATTGCAGCAGAGAAGAAGCTATATGCAATGGTCTTACCAGGGTTCTGGATGGACATTGGACAGCCAAGGGACTACATCACAGGCCTGAGACTCTACCTAGACTCCTTGAGAAAGAAGTCTTCTTCTAAATTGGCTTCTGGGGCCCACATTGTTGGAAATGTTCTGGTGGATGAGAGCGCCAAAATTGGAGAAGGATGTCTGATCGGTCCTGATGTTGCCATTGGCCCAGGTTGCGTGGTTGAGGCTGGAGTCAGGCTCTCTCGCTGCACAGTGATGCGTGGAGTGCGCATCAAGAAGCATGCATGCATCTCCAGTAGCATCATCGGGTGGCACTCCACTGTTGGCCAGTGGGCTCGTGTGGAGAACATGACCATACTTGGAGAAGATGTTCATGTGTGTGATGAAATCTACAGCAATGGAGGCGTTGTTCTGCCTCACAAAGAGATCAAATCTAGCATCTTGAAGCCAGAGATAGTCATGTGA 1086 0.4678 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVSEVVLAINYQPEVMLNFLKEFEAKLGITITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFKEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESIGRVDRFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSSKLASGAHIVGNVLVDESAKIGEGCLIGPDVAIGPGCVVEAGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0423 361 Pfam Bacterial transferase hexapeptide (six repeats) 260 295 IPR001451 -
Vvi13g0423 361 Gene3D Hexapeptide repeat proteins 234 356 - -
Vvi13g0423 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Vvi13g0423 361 FunFam mannose-1-phosphate guanyltransferase beta 1 232 - -
Vvi13g0423 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 233 IPR029044 -
Vvi13g0423 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058
Vvi13g0423 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 360 - -
Vvi13g0423 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0423 Vvi-Chr13 3587205 3588882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0423 1 185 Eukaryotic Initiation Factors Gene Family AT4G18300 22.280 3.40e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0423 K00966 - vvi:100233006 695.656