Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0421 ATGGCGTTGGTCGACAGATCCGGGTCAGGTTGGAATTCGAATCCGCCAAAAGCGGAGAAGATCCGGTGGGGAGAGCTCGATGAAGACGACGGAGAAGACCTCGATTTTCTACTGCCACCCCGCCAAGTGATTGGGCCGGAAGAGAATGGCATCAAGAAGGTGATTGAGTACAAGTTCAATGAAGATGGAAACAAGGTCAAGATCACCACCACCACTCGTGTTCGGAAGCTTGCCAAGGCTCGCCTCAGTAAGCGAGCCGTGGAGCGTCGCTCATGGGCTAAGTTCGGGGACGCGGTTCATGAGGATGTCGGGAGTAGGCTTACCATGGTCTCCACTGAAGAGATTCTTCTTGAAAGACCTAGAGCTCCGGGTACCAAAGCAGAAGAAACCAAGATTGCTGGAGACTCCTTGGCTCAGCTTGGAAAGGGAGGTGCTGTTCTCATGGTGTGCAGAACTTGTGGTAAGAAAGGTGACCATTGGACATCTAGATGCCCATACAAGGATCTCGCAGCACAAACTGATGCCTTCGTTGACAAACCTCCCGCTGCCGAGACCACTGTGGCTACTACAGGCACTGGCAAAGCCGCTTATGTGCCTCCAGGCATGAGACCTGGTGCAGAGAGAGTTGGATCAGATATGAGGCGCAGGAATGAAGAGAATTCAGTTCGGGTCACCAACCTATCAGAGGACACAAGGGAGCCTGACTTGCATGAGCTATTCCGCACATTTGGCCCAGTAAGTCGGGTCTACGTGGCGATTGACCAAAAGACCGGCATGAGCAGAGGTTTTGGTTTTGTCAATTTTGTAAACAAGGAAGATGCAGAGAGGGCTATCAACAAGCTGAATGGGTATGGTTATGACAATCTCATCCTCAGAGTGGAATGGGCCACACCCAGGACAAACTAG 906 0.5177 MALVDRSGSGWNSNPPKAEKIRWGELDEDDGEDLDFLLPPRQVIGPEENGIKKVIEYKFNEDGNKVKITTTTRVRKLAKARLSKRAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGTKAEETKIAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAAQTDAFVDKPPAAETTVATTGTGKAAYVPPGMRPGAERVGSDMRRRNEENSVRVTNLSEDTREPDLHELFRTFGPVSRVYVAIDQKTGMSRGFGFVNFVNKEDAERAINKLNGYGYDNLILRVEWATPRTN* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0421 301 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 30 297 - -
Vvi13g0421 301 CDD eIF3G 49 168 IPR024675 -
Vvi13g0421 301 PIRSF Transl_init_eIF-3_RNA-bind 13 301 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vvi13g0421 301 Gene3D - 195 301 IPR012677 -
Vvi13g0421 301 Pfam Eukaryotic translation initiation factor 3 subunit G 42 169 IPR024675 -
Vvi13g0421 301 CDD RRM_eIF3G_like 221 296 IPR034240 -
Vvi13g0421 301 MobiDBLite consensus disorder prediction 1 24 - -
Vvi13g0421 301 SUPERFAMILY RNA-binding domain, RBD 218 300 IPR035979 GO:0003676
Vvi13g0421 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Vvi13g0421 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 288 IPR000504 GO:0003723
Vvi13g0421 301 FunFam Eukaryotic translation initiation factor 3 subunit G 185 301 - -
Vvi13g0421 301 SMART rrm1_1 221 294 IPR000504 GO:0003723
Vvi13g0421 301 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 20 300 IPR017334 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0421 Vvi-Chr13 3574887 3578920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0421 17 299 Eukaryotic Initiation Factors Gene Family AT3G11400 71.975 1.43e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0421 K03248 - vvi:100251333 579.711