Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0420 ATGCCTAACCTGCTCCTCTTCACGGCGGCCCTGCTACTCTGCGCAGTGTGCGCAATGGCAGCCAATCGCTGCCCGGACTGCGGCAACACTTCTGTGCCCTACCCGCTCAGCACCGGAGCCGACTGCGGCGACCAAGAGTACAAGATCCGGTGCGATGCGGGCACACTCAGATTCGATACGCTCAACTCTTCCTACTCCATCTCATCCATCACTCCTCAAATCCAACGGTTCGTGATCCGGCCGGCGAGCTTCGCCGGTAACACCTGCGTCACCACCGATCTCCCCAACCAGGGAATCCAGCTCAACGAGAGCCTTCCCTTCAACGTCACCAGCAGCAACACCATCCTGTACCTCAACTGTACGGACACGCTTCTCCGGTCGCCGTTGAACTGCTCCTCCATCAGCCTCTGCCACACTTACATCAACGGCACACGAGACGCGGCAGCGTGCGAGGACGCGCCTATTTGCTGCACGTTTAAGGCGGGTGGTTCTACGACGTCGCATTCGATACGGGTTCGCGACGCGGGGTGCAGAGCTTATCGGAGTTTCGTGAACCTGGACGCGAGTACTCCGGTGAACCGTTGGCCAGAACCAGGCGTGGAGATCCAGTGGGTGTCTCCGAGGGAACCGGTTTGCACGTCCCAATCTGACTGCACCGATGGGATGAACTCCACTTGTGGGCCGGACCCAGCCACTGCTGGGGTGAGCCGGTGCTTTTGCAAATCAGGACTTTGGTGGGATCCAGTTGGTGGATTATGCGCACAGAATGTGACGTGTCAAGATCCAGATGGTTGTGGTTCCACAAACAAGACTCCACTCATAGCAGGTTTAACAGTAGGCATCGGTGCAGCCCTGATTGCAGCGGTCATCGCTATTCTAGTTTACAGACGGCACCGGCGCATCAAGGAAGCACAAGACCGGCTGGCAAGAGAGAGAGAGGAGATCCTAAACGCCAATGGCGGTGGCAAATTCGCCAAAAACTTCACGGGCAAAGAGATAAAGAGAGCAACAAACAGTTTCTCCCACGACCGCCTGCTCGGGGCTGGCGGCTATGGTGAAGTCTATAAAGGCATCCTTGATGATGGGACCATCGTTGCTATCAAATGCGCTAAGCTCGGCAACGCAAAAGGCACTGATCAGGTCCTCAATGAGGTGGGGATTCTTTGCCAAGTGAACCACAGAAGCCTTGTCCGCCTTCTAGGCTGCTGTGTGGAGCTGGAGCAGCCGATCATGGTTTACGAGTTCATCCCAAATGGGACTCTTCTGGAACATTTGCAAGGCCAACGGCCTGGTGGCCGGGGTTCACTTACATGGAGTCATCGCCTCCGCATTGCCCATGACACGGCTGAGGGTCTGGCTTACCTCCATTCCTCTGCAGTTCCCCCAATCTATCATCGAGATGTCAAATCCAGCAACATTTTGCTTGATGAGAAGATGAATGCTAAGGTTGCAGATTTCGGGTTATCTAGGTTGGCTCATACTGATATGAGTCATGTATCCACATGTGCTCAAGGAACTCTTGGATATCTCGATCCTGAGTATTACAGGAACTATCAGTTGACAGATAAGAGTGATGTTTATAGCTTTGGAGTAGTGTTGTTGGAGCTGTTAACATCGCAGAAAGCCATTGATTTTAATCGACCCGCTGATGATGTGAACTTGGCAGTTTATGTGCAGAGGACAGTGGAGGAGGAGAGGTTGATGGATGCCATTGATCCATTACTCAAAGAGCAGGCCAGCAGTTTGGAGCTTGAGACCATGAAGGCTATGGGATTTCTGGCCGTGGGTTGCTTGGAAGAACGAAGGCAAAATCGACCGTCAATGAAAGAAGTTACAGAGGAGATTGGGTATATCATAAGTATTGCAACAGCAAAGGTGGTAGAGCAGTAG 1890 0.5323 MPNLLLFTAALLLCAVCAMAANRCPDCGNTSVPYPLSTGADCGDQEYKIRCDAGTLRFDTLNSSYSISSITPQIQRFVIRPASFAGNTCVTTDLPNQGIQLNESLPFNVTSSNTILYLNCTDTLLRSPLNCSSISLCHTYINGTRDAAACEDAPICCTFKAGGSTTSHSIRVRDAGCRAYRSFVNLDASTPVNRWPEPGVEIQWVSPREPVCTSQSDCTDGMNSTCGPDPATAGVSRCFCKSGLWWDPVGGLCAQNVTCQDPDGCGSTNKTPLIAGLTVGIGAALIAAVIAILVYRRHRRIKEAQDRLAREREEILNANGGGKFAKNFTGKEIKRATNSFSHDRLLGAGGYGEVYKGILDDGTIVAIKCAKLGNAKGTDQVLNEVGILCQVNHRSLVRLLGCCVELEQPIMVYEFIPNGTLLEHLQGQRPGGRGSLTWSHRLRIAHDTAEGLAYLHSSAVPPIYHRDVKSSNILLDEKMNAKVADFGLSRLAHTDMSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNRPADDVNLAVYVQRTVEEERLMDAIDPLLKEQASSLELETMKAMGFLAVGCLEERRQNRPSMKEVTEEIGYIISIATAKVVEQ* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0420 629 Gene3D Phosphorylase Kinase; domain 1 301 415 - -
Vvi13g0420 629 Coils Coil 301 321 - -
Vvi13g0420 629 CDD STKc_IRAK 346 615 - -
Vvi13g0420 629 Pfam Protein tyrosine and serine/threonine kinase 343 614 IPR001245 GO:0004672|GO:0006468
Vvi13g0420 629 SMART serkin_6 340 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0420 629 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 618 IPR045274 GO:0007166
Vvi13g0420 629 ProSiteProfiles Protein kinase domain profile. 340 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0420 629 SUPERFAMILY Protein kinase-like (PK-like) 325 613 IPR011009 -
Vvi13g0420 629 Gene3D Transferase(Phosphotransferase) domain 1 416 627 - -
Vvi13g0420 629 FunFam Wall-associated receptor kinase-like 20 416 628 - -
Vvi13g0420 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Vvi13g0420 629 FunFam Wall-associated receptor kinase-like 20 302 415 - -
Vvi13g0420 629 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0420 Vvi-Chr13 3570943 3573317 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0420 23 628 Receptor kinase-like Gene Family AT5G02070 54.839 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vvi13g0420 PK_Tyr_Ser-Thr 3.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0420 - - vvi:100246196 1237.25