Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0419 ATGGTATCATCAACGGGGAAGAACAATGAGTTCTGGCCGTCAAGGTTCCACAATCTCCATCTAGTCCCTCTTATAGGCTGTTGCACCATCCCCAAGCAAGGATCCTCATATACGAACGTTGCCCAAGGAAGCTTCCGTGATCGTTTTTATAAAACAAATAAGGTTCTATTGACATGGAAGCAATGGCTCGAGATCGGTATCGGTGCTGCTCGGGGACTGAAGCATCTACATCAAGGCTCGGAATGCGAAATCATTCACCAGGACATCAAGACCACAGATATTTCGTTAGATAAGAAACGGGTGGCCAAATTTGCTGATTTCGGAGTGGTGTTGTTCGAAGTACTGTGCGCGGGACTGGCTGTGGAAGGGAGCCTGATGAAGGAGCGTTCTTTGAGGGGCACGGAGACGAAGGCGATGCAATGTTATGCAGAAGGTAGATGGAAAGGGTTCCGAGATTAG 459 0.4837 MVSSTGKNNEFWPSRFHNLHLVPLIGCCTIPKQGSSYTNVAQGSFRDRFYKTNKVLLTWKQWLEIGIGAARGLKHLHQGSECEIIHQDIKTTDISLDKKRVAKFADFGVVLFEVLCAGLAVEGSLMKERSLRGTETKAMQCYAEGRWKGFRD* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0419 152 Gene3D Transferase(Phosphotransferase) domain 1 10 137 - -
Vvi13g0419 152 PANTHER OS07G0166700 PROTEIN 14 109 IPR045272 GO:0004714|GO:0006468
Vvi13g0419 152 Pfam Protein tyrosine and serine/threonine kinase 15 109 IPR001245 GO:0004672|GO:0006468
Vvi13g0419 152 ProSiteProfiles Protein kinase domain profile. 1 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0419 152 SUPERFAMILY Protein kinase-like (PK-like) 14 112 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0419 Vvi-Chr13 3566706 3567164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0419 14 125 Receptor kinase-like Gene Family AT2G21480 47.414 9.29e-23 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi13g0419 PK_Tyr_Ser-Thr 6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0419 - - vvi:104881160 318.161