Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0413 ATGTACACATCGAGGAGGAAAATCCAAAAGGACCAGGGTGTGGAACCTAGTGAATTTGAGGACTTGGTGGCACAGTCATTCTTTGATTTGGAGAATACCAATCTGGAGCTGAAAAGTGATCTGAAGGACATTTACATTAATTCTGCAGCTCAAATTGATGTTTCTGGCAAGAGGAAGGCTGTGGTCATTTATGTCCCTTACAGGCTGCAGAAAGCTTTTCGAAAAATCCATCTGAGGCTTGTTGGGGAATTGGAGAAGAAGTTTAGTGGGAAGCATGTAGTCTTGATTGCTGCTAGAAGGATCCTGCATCCTCCAAAGAAGGGTTCTGCTGTTGTGCGACCCAGGACCCGCACTCTCACAGCAGTTCATGAGGCCATGTTGGAGGACATTGTTTACCCGGCAGAAATTGTTGGAAAGTGTGTTAGGTACAGAGCTGATGGTTCCAAGATAATCAAGATTTTTCTTGATCCAAAGGAGCAGAACAATACTGAAAACAAACTAGAGACCTTTGCTGGAGTCTACAGAAAGCTTTCTGGTAAAGATGTGGTGTTTGAATACCCTGTTACTGTTTCTGCATAG 579 0.437 MYTSRRKIQKDQGVEPSEFEDLVAQSFFDLENTNLELKSDLKDIYINSAAQIDVSGKRKAVVIYVPYRLQKAFRKIHLRLVGELEKKFSGKHVVLIAARRILHPPKKGSAVVRPRTRTLTAVHEAMLEDIVYPAEIVGKCVRYRADGSKIIKIFLDPKEQNNTENKLETFAGVYRKLSGKDVVFEYPVTVSA* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0413 192 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vvi13g0413 192 PANTHER 40S RIBOSOMAL PROTEIN S7 1 189 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0413 Vvi-Chr13 3509589 3512722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0413 1 188 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 73.404 7.06e-103 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0413 K02993 - vvi:100253080 377.096