Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0409 ATGGCTGGGATTTGCTGCGGAGTTGTTGGCGAGAGTAAAACACAGGCGGCGATTGAGCCCAGTTCCCGACCGGCGAGGCGTCGTAGAGTGGACGTACGCCATCTGAAATTTGTTGCCGGTGTTTCCGTCCCGACGCCGGAGAAGAGCCGTAAACGCCAGAAGCTAGAGGTTTATGATAAGACAGCTTCGGAGGCGGCGCGTGAGTGCGAAAACGCCTTAGAGAATTGTAAAGTGCAGGAAGACGAATCTGTAGAACTGAAAGGAGGTGTTTCTGTCCAGGTGGAGCAGGATCAGTTGGTCCAGGAATGCCCTAAATTTGGTATGACGTCTGTACGTGGCAGGAGGAGAGATATGGAGGACGCTGTATCGATACATCCATCGTTCTGGGGCCAAGACGCCCAAAATTGTACTGGATTACACTACTACGGCGTTTACGACGGCCATGGCTGCTCTCATGTGGCGATGAAGTGCAAAGATCGGATGCATGAGATTGCAAAAGAGGAAATCGAGAGATGTGGGCAATCATGGGAACAGGTGATGGAGCGAAGCTTCTCGCGCATGGACAAGGAGGTGGTAGAATGGTGTAATGGTCAGTGGAGCTCGAATTGCAGGTGCGAGCTTCGGACGCCGCAGTGCGACGCAGTTGGATCTACGGCCGTTGTTGCGATTGTAACGCCGGAGAAGGTTGTCGTTTCTAATTGTGGTGATTCCCGCGCCGTTCTTTGCCGTAACGGCGTCGCCATTCCTCTGTCATCCGACCACAAGCCTGATCGACCCGATGAACTGCTACGGATCCAGGCCGCCGGCGGTCGTGTAATATATTGGGATGTTCCACGGGTTCTCGGAGTCCTAGCCATGTCCAGAGCTATAGGTGACAATTACTTGAAACCGTACGTAATTTCGGAACCGGAGGTGACGACATGGGACCGAAGCCCAGAGGACGAGTGTTTGATCCTGGCAAGCGACGGACTATGGGACGTAGTGTCCAACGATACAGCATGCGGAGTGGCACGTATGTGTCTGAATGCGCAGGCGCCGCCGTCTCCGCCGGTGTCACCGGAAACTGGAGCTGGGATAGGTGCAGGCGGCGAGAGCTCCGACAAAGCTTGCTTAGACGCGTCTATGCTGCTGACGAAGTTGGCCTTGGCTCGGGATAGTGCGGATAACGTCAGCGTGGTTGTAGTTGACCTGAGAAACAAATAA 1203 0.5436 MAGICCGVVGESKTQAAIEPSSRPARRRRVDVRHLKFVAGVSVPTPEKSRKRQKLEVYDKTASEAARECENALENCKVQEDESVELKGGVSVQVEQDQLVQECPKFGMTSVRGRRRDMEDAVSIHPSFWGQDAQNCTGLHYYGVYDGHGCSHVAMKCKDRMHEIAKEEIERCGQSWEQVMERSFSRMDKEVVEWCNGQWSSNCRCELRTPQCDAVGSTAVVAIVTPEKVVVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELLRIQAAGGRVIYWDVPRVLGVLAMSRAIGDNYLKPYVISEPEVTTWDRSPEDECLILASDGLWDVVSNDTACGVARMCLNAQAPPSPPVSPETGAGIGAGGESSDKACLDASMLLTKLALARDSADNVSVVVVDLRNK* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0409 400 ProSiteProfiles PPM-type phosphatase domain profile. 105 397 IPR001932 -
Vvi13g0409 400 Pfam Protein phosphatase 2C 106 352 IPR001932 -
Vvi13g0409 400 SUPERFAMILY PP2C-like 104 399 IPR036457 -
Vvi13g0409 400 Gene3D - 93 400 IPR036457 -
Vvi13g0409 400 CDD PP2Cc 105 397 IPR001932 -
Vvi13g0409 400 Coils Coil 55 82 - -
Vvi13g0409 400 FunFam Protein phosphatase 2C 37 100 400 - -
Vvi13g0409 400 PANTHER PROTEIN PHOSPHATASE 68 397 IPR015655 GO:0004722|GO:0006470
Vvi13g0409 400 ProSitePatterns PPM-type phosphatase domain signature. 141 149 IPR000222 GO:0043169
Vvi13g0409 400 SMART PP2C_4 93 395 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0409 Vvi-Chr13 3477443 3479484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0409 1 372 PP2C-type Phosphatase Gene Family AT3G11410 55.875 9.07e-141 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0409 K14497 - vvi:100247958 784.637