Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0402 ATGGGGCAAGCTCAGTACCTCATGTTGATGAACAAGAAACATATTCTGAATTCCCATTGTCAAGCACCGATGAGCTTGTTCAACGATTCGTGGGAAGAACAAGCTTTCGCAGAAGATGCTGCAGGAGCTCTTGGACTTGGAGGATGCATATGGCCTCCCAGATCGTATTCATGTAGTTTCTGTAGAAGAGAATTTAAGTCTGCTCAAGCCTTAGGTGGTCACATGAATATCCATAGGAGGGATAGAGCTAGGCTCAAACAGTCTCTTAGTCCCCACAATGAAACTGACCTTCATAGTCAAAATCATGGTTCTCACAAACCTGACTCCAATCCCGGGCCCGGTTTTCTTTCATCACCTCTCTCTCCTTCTAGGGTTTCAGCTTTATCGACTCTGGAGAGTTTTAGTGAGCATAGCTTTGTCTCTCCACCTTATTCCTCTTCTATTCTCCAAGGACACCCAAAGGGATCTTCTTGTTCTTCCCCTCCAACTTGGTCTGATTCCGTGGCAGTCACACTCCTCAGTATCTCAGATTCAAAAGCTGAATTACAAAAGAATCAAACAAAAGAAGAATCTGCAATCCAGAGCCATGAGGGTAGTACAGTGCAAACTGATTTATCTGTGAGCTTGAATTCAGTTTCTCGTCGAAATCGATCAACTGGCTCCGATGATGATGAAGCCACTGTCGGCTTTAAAAGACCTAAAACTGCTGTTTTGTCACTGCCGTTCTTCCTTAACCCTTGTCCACAACAAAGGCATCCTCTCCAACCAGAAGTACTTGGACCCAAACCTAGCTCCATGGAGGACATTGATCTTGAGCTTAGGCTTGGTGATCTGCCAAAGGTGAAGTAG 849 0.4499 MGQAQYLMLMNKKHILNSHCQAPMSLFNDSWEEQAFAEDAAGALGLGGCIWPPRSYSCSFCRREFKSAQALGGHMNIHRRDRARLKQSLSPHNETDLHSQNHGSHKPDSNPGPGFLSSPLSPSRVSALSTLESFSEHSFVSPPYSSSILQGHPKGSSCSSPPTWSDSVAVTLLSISDSKAELQKNQTKEESAIQSHEGSTVQTDLSVSLNSVSRRNRSTGSDDDEATVGFKRPKTAVLSLPFFLNPCPQQRHPLQPEVLGPKPSSMEDIDLELRLGDLPKVK* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0402 282 SUPERFAMILY beta-beta-alpha zinc fingers 53 83 IPR036236 -
Vvi13g0402 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Vvi13g0402 282 PANTHER OS07G0101800 PROTEIN 28 277 - -
Vvi13g0402 282 MobiDBLite consensus disorder prediction 91 121 - -
Vvi13g0402 282 MobiDBLite consensus disorder prediction 142 163 - -
Vvi13g0402 282 Gene3D Classic Zinc Finger 53 110 - -
Vvi13g0402 282 SMART c2h2final6 56 78 IPR013087 -
Vvi13g0402 282 Pfam C2H2-type zinc finger 56 80 - -
Vvi13g0402 282 MobiDBLite consensus disorder prediction 181 216 - -
Vvi13g0402 282 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Vvi13g0402 282 MobiDBLite consensus disorder prediction 181 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0402 Vvi-Chr13 3432929 3433777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0402 30 88 C2H2 Transcription Factor Family AT2G37740 77.966 2.30e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi13g0402 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0402 - - vvi:100249572 538.88