Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0398 ATGACGCATCGTTGGTGGGCCGGGAATGTGGCCATGCGAGACCCTATGTCCTCGGCTCCGTCGCTTCACCTCAGAAACACCGAAGATGACCAGGGTGGATTGAACCGCCTTGGACCCAGAAGAGAGCAAGAGTTCATGGACAATAACAACAACAACACTACCACCACCACCAACACGACCGCCACAAATAGCAGTAGCAGCAACACTAACCCAAACCCTAGTGCTGCCAATCAGAACCCTGAGGAAGAAGACAGCAGAGAAATCGACCTGGAAGACAGTGAGCAGAACGCTGGCGGCCACGAAATCGCCGAACCTAGTAGTGCTGGTCGCCGGCCCAGAGGCCGACCGCCCGGTTCAAAAAACAAGCCGAAGCCTCCGATAGTCATTACTAAAGAGAGCCCAAATGCGCTCAGAAGCCATGTATTAGAAATCAGCAGCGGAAGCGACATCGCGGAGAGTATTGCCAACTTTGCTCAGCGCCGCCACCGTGGGGTCTCGGTCCTCAGTGCCAGCGGCATTGTCAACAATGTCACCCTCCGGCAACCGGCAGCTCCAGGAGGCGTAATCACACTTCAAGGCAGATTTGAGATACTGTCTCTATCGGGAGCATTCTTGCCAGCGCCATCCCCACCGGGGGCTACTGGGCTGACGGTCTATTTGGCCGGAGGGCAAGGGCAGGTGGTAGGTGGAAGCGTTGTGGGTGCGCTTATGGCTTCGGGCCCAGTGATTGTGATTGCTGCCACCTTTTCCAATGCGACTTTCGAGCGTTTGCCGCTTGAAGATGAGCCAGCAAATGAAGGAATACAAATGCCACAAACATCAGGGGTGAATTCAGGAACTGGTGGCACTTCAGCACCTCAATCTCATGGTTTGGTCGATCCATCTTCCATGCCCATCTACAATCTCCCCCCCAATCTTCTACCCAATGGACAAATGCCCCATGACGTTTTTTGGGCACCTCCTCCACGTCCACCTCCTTACTAA 984 0.5467 MTHRWWAGNVAMRDPMSSAPSLHLRNTEDDQGGLNRLGPRREQEFMDNNNNNTTTTTNTTATNSSSSNTNPNPSAANQNPEEEDSREIDLEDSEQNAGGHEIAEPSSAGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEISSGSDIAESIANFAQRRHRGVSVLSASGIVNNVTLRQPAAPGGVITLQGRFEILSLSGAFLPAPSPPGATGLTVYLAGGQGQVVGGSVVGALMASGPVIVIAATFSNATFERLPLEDEPANEGIQMPQTSGVNSGTGGTSAPQSHGLVDPSSMPIYNLPPNLLPNGQMPHDVFWAPPPRPPPY* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0398 327 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 66 320 IPR014476 GO:0003680
Vvi13g0398 327 MobiDBLite consensus disorder prediction 267 291 - -
Vvi13g0398 327 FunFam AT-hook motif nuclear-localized protein 137 264 - -
Vvi13g0398 327 ProSiteProfiles PPC domain profile profile. 134 272 IPR005175 -
Vvi13g0398 327 MobiDBLite consensus disorder prediction 261 295 - -
Vvi13g0398 327 Pfam Plants and Prokaryotes Conserved (PCC) domain 138 251 IPR005175 -
Vvi13g0398 327 CDD DUF296 138 221 IPR005175 -
Vvi13g0398 327 MobiDBLite consensus disorder prediction 13 131 - -
Vvi13g0398 327 Gene3D - 137 266 - -
Vvi13g0398 327 MobiDBLite consensus disorder prediction 44 79 - -
Vvi13g0398 327 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0398 Vvi-Chr13 3394297 3395280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0398 110 325 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 63.761 6.20e-77 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0398 - - vvi:100261537 562.762