Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0396 ATGACAGGGATTGGTGCTTCATGTGGTGCGTGCAAGTTCTTGAGGAGAAGGTGCACGAGTGACTGTGTTTTTGCCCCTCACTTCTGTTATGACCAGGCTGCATCCCATTTTGCGGCAGTGCACAAGGTGTTTGGTGCCAGCAATGTCTCTAAGCTATTGCTACACCTTCCCTTGCATAACCGAGGCGAAGCTGCTATCACAATCTCTTATGAAGCACTCGCTCGGATGCGGGATCCTGTCTATGGTTGTGTCGCTCATATCTTTGCACTCCAACAACAGGTTGCCAACCTACAAGAGGAGATAGAAATTCTAGGGAACCACATGGCTACTTTTGCTCCTGATACTGTTACTGGTGAACATTATGGAGCAACTAATAACCTTAACACTGGCCTGCAATTTTCTTCACAAACCGACACTCTGAATATGCAAGATTATCTCAACCAACAGGCTCTGCTACTATCCCATGCAGGGAATGCAACTGCAAATCAGGCCTTTGACAGCCTAATGAATGAACAGCCACCTCCTTTGTATGGATGGGAAAACCAGAACTTTTTCTGCGACTCCGACGCAACCCCATTAGAGAGACTCTTTGAAGGAATTGACCAAGAGTTCTCTGCCTATTACCCATGGTCGGACAACACTACCTATCCCAAAAACTGA 660 0.4682 MTGIGASCGACKFLRRRCTSDCVFAPHFCYDQAASHFAAVHKVFGASNVSKLLLHLPLHNRGEAAITISYEALARMRDPVYGCVAHIFALQQQVANLQEEIEILGNHMATFAPDTVTGEHYGATNNLNTGLQFSSQTDTLNMQDYLNQQALLLSHAGNATANQAFDSLMNEQPPPLYGWENQNFFCDSDATPLERLFEGIDQEFSAYYPWSDNTTYPKN* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0396 219 Coils Coil 87 107 - -
Vvi13g0396 219 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Vvi13g0396 219 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 151 - -
Vvi13g0396 219 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0396 Vvi-Chr13 3355970 3356735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0396 1 118 AS2 family AT5G06080 72.881 6.15e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi13g0396 LOB 1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0396 K13945 - vvi:100241046 458.759