Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0394 ATGCTTCGCTTGACGAACGATGTCGCTAGATGGTTTGGTCGTGGCTTTTATCCGTCTCCGATCCGGTTCAAGAACTCCAGTGGTGGGAAAGCTTTCTCCTTCTCAACAGCCTTTGCTTTCGCAATTGTGCCCCAGTATCCGACACTGGGAGGCCATGGGCTTGCTTTTGCGATTACATCCACGAAAGAGCTCCCAGGGGCTCTTCCCAGACAGTATCTAGGTCTGCTCAATGCCACCGACAATGGGAATTCAACCAACCATGTGTTTGCTGTGGAGTTCGACACTGTTCAGGACTTTGAATTCAATGATATCAGTGATAATCATGTCGGCATCGATCTCAATAGTATGACATCCTACGCTTCTGCTAACGCTTCATATTTCAGCGATAATTCGACAAAGGAGTATCTTAATCTCAAGGGCGGGAAGACAATTCAGGCATGGATAGATTATGATGGACAAAGGGATCAGTTGAATGTATTCCTTTCGCCTCATTCAACGAAACCCACCTCCCCAATCTTGTCTTGCGGTGTGAATCTTTCATCAATCCTCAAGGAATTTATGTATGTGGGCTTCTCTGCTTCCACTGGTCTTCTTGCCAGCTCTCACTATGTCTTGGGATGGAGGTTCAAGATGAACGGTGTGGCAGAATCACTGGATCTCTCATCCCTCCCTAAGCTCCCTGGCCCTAAAAGGAACAATACACCTTTAATTATAGGTGTTTCTGTTGCTGCTACTTCTATGATAGTTTTCGCAGTTGCCTTGGCTTTCTATCTGATCAGAAAGATAAAAAATGCGGATGTGATTGAGGCGTGGGAGCTCGATATTGGCCCACACAGATTCTCCTACCAAGAGCTGAAGAAGGCGACCAGGGGTTTTAGGGACAAAGAGCTAATTGGGTTTGGTGGATTTGGCAAGGTTTATAAGGGAACTCTACGGAATTCCAACACTCAAGTTGCAGTTAAACGAATTTCGCACGAATCAAAACAGGGTATGAGGGAATTTGTTTCTGAAATTGCTAGTATTGGCCGTCTTCGCCACAGGAACTTGGTTCAGCTCCTAGGATGGTGTCGTAGAAGAGGTGATTTGCTACTTGTCTATGATTATATGCCTAATGGAAGCTTGGATAAGTACCTTTTCGACACATCCAAATCAACTCTCAGTTGGGAACAGAGGTTCAAGATCATCAAAGGTGTAGCTTCAGGCCTTCTTTACTTGCATGAAGAATGGGAGCAAACTGTAATTCACAGAGACATCAAGGCAGGAAATATTTTGTTGGATTCTGAGTTAAATGGTAGACTCGGCGATTTTGGCCTTGCTAAGTTATATGAGCACGGCTCAAACCCGAGCACCACAAGGGTTGTGGGCACACTGGGGTATCTGGCACCAGAGCTTACACGCACAGGGAAGCCAACAAGAAGTTCGGACGTGTTTGCATTTGGTGCATTGTTACTAGAGGTGGTTTGTGGTAGAAGACCTGTGGAGGCCAAAGCTCTGCCTGAAGAGCTGATATTGGTGGATTGGGTGTGGGAGAGGTGGAGGGAGGGTGCAATTCTTGATGTGGTGGATCCAAGATTGAAGGGTGAGTATGATGAAGTAGAGGTAGTGGTGGTGCTGAAACTGGGTTTGATGTGTTCCAACAATTCCCCTGCTGTGCGCCCCTCTATGAGGCAGGTTCTAAGGTACTTGGAAGGGGAGGTGGCCTTGCCGGAGGAGTTGAGTGCACCAGATGCATATGATAAAAAGGGTGGTGGTGCAGGTGATGGTTTTGAGTTTGAGGATTATGTGCATTCTTATCCCGCATCATCGTGTTTTGAGAAGGTGAGCACGTGGTCATCGGCTGTGGATGATGTTGATGTTGAATCTAGTTCAGTTTCCCCTCTTGTCACGTAG 1890 0.4667 MLRLTNDVARWFGRGFYPSPIRFKNSSGGKAFSFSTAFAFAIVPQYPTLGGHGLAFAITSTKELPGALPRQYLGLLNATDNGNSTNHVFAVEFDTVQDFEFNDISDNHVGIDLNSMTSYASANASYFSDNSTKEYLNLKGGKTIQAWIDYDGQRDQLNVFLSPHSTKPTSPILSCGVNLSSILKEFMYVGFSASTGLLASSHYVLGWRFKMNGVAESLDLSSLPKLPGPKRNNTPLIIGVSVAATSMIVFAVALAFYLIRKIKNADVIEAWELDIGPHRFSYQELKKATRGFRDKELIGFGGFGKVYKGTLRNSNTQVAVKRISHESKQGMREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDYMPNGSLDKYLFDTSKSTLSWEQRFKIIKGVASGLLYLHEEWEQTVIHRDIKAGNILLDSELNGRLGDFGLAKLYEHGSNPSTTRVVGTLGYLAPELTRTGKPTRSSDVFAFGALLLEVVCGRRPVEAKALPEELILVDWVWERWREGAILDVVDPRLKGEYDEVEVVVVLKLGLMCSNNSPAVRPSMRQVLRYLEGEVALPEELSAPDAYDKKGGGAGDGFEFEDYVHSYPASSCFEKVSTWSSAVDDVDVESSSVSPLVT* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0394 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Vvi13g0394 629 Pfam Protein kinase domain 293 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0394 629 CDD lectin_legume_LecRK_Arcelin_ConA 2 213 IPR001220 GO:0030246
Vvi13g0394 629 PANTHER - 12 569 - -
Vvi13g0394 629 Pfam Legume lectin domain 2 224 IPR001220 GO:0030246
Vvi13g0394 629 Gene3D Phosphorylase Kinase; domain 1 277 368 - -
Vvi13g0394 629 ProSiteProfiles Protein kinase domain profile. 292 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0394 629 FunFam L-type lectin-domain containing receptor kinase S.4 1 217 - -
Vvi13g0394 629 SUPERFAMILY Protein kinase-like (PK-like) 273 571 IPR011009 -
Vvi13g0394 629 Gene3D - 1 221 - -
Vvi13g0394 629 Gene3D Transferase(Phosphotransferase) domain 1 369 577 - -
Vvi13g0394 629 CDD STKc_IRAK 298 564 - -
Vvi13g0394 629 ProSitePatterns Protein kinases ATP-binding region signature. 298 321 IPR017441 GO:0005524
Vvi13g0394 629 FunFam Lectin-domain containing receptor kinase A4.3 277 368 - -
Vvi13g0394 629 SMART serkin_6 292 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0394 629 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 229 IPR013320 -
Vvi13g0394 629 FunFam L-type lectin-domain containing receptor kinase S.4 369 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0394 Vvi-Chr13 3340920 3342809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0394 2 597 Receptor kinase-like Gene Family AT3G55550 64.812 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi13g0394 Pkinase 3.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0394 - - vvi:100263312 1218.37