Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0388 ATGTCGTATTGGTGCTATAGTTGCAATCGGTTCGTTAGGGTTTGGAGTCACGATGCAATCGTCTGTCCCGATTGCGATGGGGGTTTTCTGGAGGAGATCGAGGAACAGCCTCGGCGCCCCCACAGGTTTCCTGCGGCTGCGATGTACATGATTGAGAATCGGCCCAATTCGGCTCAGAATTCCCATTCGGCGGTCCGGCGCATCCGGAGGGGCCGTGGTGACCGGTCGCCGTTCAATCCGGTCATCGTTATGAGGGGAACAGCTGATGAGGGTGGCGGCGAGGGTGGAGATAGAGGTGCGTTTGATCTTTACTACGACGACGGTGGCGGTTCGGGGCTTAGGCCGTTGCCGGCCAGTGTGTCGGAGTTTTTGCTGGGATCGGGTTTTGACCGGCTTCTCGAACAGCTTTCGCAGATGGAAATCAACGGAATTGGGCGGTACGAGCAACCTCCGGCGTCGAAGGCGGCGATTGAGGCGATGCCCACAATTGAGATCGCGGATGCTCATGTAAACACAGAACATCACTGTGCTGTATGCAAAGAACCCTTCGAATTGGGCGCCGAAGCTCGCGAAATGCCTTGTAAGCACATATATCACTCCGATTGCATCCTACCATGGCTCTCCCTCCGCAACTCTTGTCCCGTTTGCCGACACGAATTGCCCTCCGAAGAGCGAAACTCGCCGGAATCCAACGAGCAAACCCCCGAGGAAACCGTGGGTTTGACGATATGGAGGCTTCCGGGTGGTGGGTTTGCTGTAGGGAGGTTTTCGGGAGGCAGAAGAGGCGGCGAGCGAGAGCTTCCGGTAGTTTATACAGAAATGGACGGTGGGTTTAACAATGGCGGTGCTCCGAGAAGAATTTCGTGGACGTCGCGAACGAATAGGAATCAAGAGAGGGGCGGATTGGGACGGATGTTTCGGAATCTGTTGGCTTGCTTTGGGGGGCATGGATCGTCCTCTTCTAGTTCGAGCTCAGAATCTGGAAGTAGACGTAGGAGCAGTAGTTCCTTGTTAACTTTGGGTTCATCTTCACGGAATCGTAGAGCGTGGGCCCTTGAAGTTAACACTTCAACGCCAGCTGTTATATTACCCCTTAAAACGCAGGTCCTTCCTTCTGGGTCAGTTCCTAGACCTTCTAGCAAGCTCTCTTTCCACCACAACGTGTCCTTAACGGTCTCACTCACAGTTGGCTCTCCTCCACAAACCGTCACCATGGTTCTTGACACTGGAAGCGAGCTCTCATGGCTTCACTGCAAAAAAGCCCCAAACTTGCACTCTGTTTTTGACCCACTTCGCTCTTCCTCATATTCACCTATTCCTTGTACTTCACCCACTTGCCGAACCCGGACCCGTGACTTCTCCATACCCGTTTCTTGCGACAAGAAAAAGCTCTGTCACGCCATAATCTCCTACGCCGACGCCTCCTCCATTGAAGGCAACCTTGCCTCCGATACTTTTCATATCGGAAATTCGGCCATACCCGCCACGATATTCGGGTGCATGGATTCTGGGTTTAGTAGTAACTCGGATGAAGATTCCAAGACTACCGGTTTGATTGGTATGAATAGGGGGTCTCTCTCTTTCGTTACCCAGATGGGCTTGCAGAAATTTTCCTACTGCATATCGGGCCAGGACTCCTCCGGTATCTTACTCTTCGGAGAATCGAGTTTTTCGTGGCTCAAGGCCTTAAAGTACACTCCACTAGTTCAAATATCGACTCCGTTGCCGTACTTCGACCGAGTTGCGTACACGGTTCAGCTTGAGGGTATTAAAGTAGCTAATTCGATGCTACAGTTGCCAAAATCGGTTTATGCACCGGACCATACCGGAGCGGGTCAAACTATGGTTGACTCCGGAACTCAGTTCACGTTCCTTCTGGGCCCGGTTTACACCGCTTTGAAGAACGAGTTCGTGAGGCAGACAAAAGCGTCGTTGAAAGTTCTGGAAGACCCCAACTTCGTATTCCAAGGAGCAATGGACTTGTGCTACCGAGTTCCCCTGACGCGTCGGACTTTGCCTCCTTTGCCAACCGTGACACTGATGTTTCGGGGGGCCGAAATGAGCGTATCGGCCGAAAGGTTAATGTATCGGGTACCGGGCGTGATAAGGGGAAGTGATTCAGTGTACTGCTTTACGTTTGGTAACTCTGAACTATTGGGTGTGGAGTCGTACATCATTGGGCATCATCATCAGCAGAACGTGTGGATGGAGTTCGATCTGGCAAAATCAAGGGTTGGATTTGCAGAGGTTAGGTGCGATCTAGCTGGTCAACGACTAGGAGTAGGTGTCTAG 2292 0.5223 MSYWCYSCNRFVRVWSHDAIVCPDCDGGFLEEIEEQPRRPHRFPAAAMYMIENRPNSAQNSHSAVRRIRRGRGDRSPFNPVIVMRGTADEGGGEGGDRGAFDLYYDDGGGSGLRPLPASVSEFLLGSGFDRLLEQLSQMEINGIGRYEQPPASKAAIEAMPTIEIADAHVNTEHHCAVCKEPFELGAEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPSEERNSPESNEQTPEETVGLTIWRLPGGGFAVGRFSGGRRGGERELPVVYTEMDGGFNNGGAPRRISWTSRTNRNQERGGLGRMFRNLLACFGGHGSSSSSSSSESGSRRRSSSSLLTLGSSSRNRRAWALEVNTSTPAVILPLKTQVLPSGSVPRPSSKLSFHHNVSLTVSLTVGSPPQTVTMVLDTGSELSWLHCKKAPNLHSVFDPLRSSSYSPIPCTSPTCRTRTRDFSIPVSCDKKKLCHAIISYADASSIEGNLASDTFHIGNSAIPATIFGCMDSGFSSNSDEDSKTTGLIGMNRGSLSFVTQMGLQKFSYCISGQDSSGILLFGESSFSWLKALKYTPLVQISTPLPYFDRVAYTVQLEGIKVANSMLQLPKSVYAPDHTGAGQTMVDSGTQFTFLLGPVYTALKNEFVRQTKASLKVLEDPNFVFQGAMDLCYRVPLTRRTLPPLPTVTLMFRGAEMSVSAERLMYRVPGVIRGSDSVYCFTFGNSELLGVESYIIGHHHQQNVWMEFDLAKSRVGFAEVRCDLAGQRLGVGV* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0388 763 PANTHER ASPARTYL PROTEASE-RELATED 344 752 IPR001461 GO:0004190|GO:0006508
Vvi13g0388 763 Gene3D Acid Proteases 555 755 IPR021109 -
Vvi13g0388 763 SMART ring_2 176 216 IPR001841 -
Vvi13g0388 763 CDD pepsin_A_like_plant 391 752 IPR034161 -
Vvi13g0388 763 ProSiteProfiles Zinc finger RING-type profile. 176 217 IPR001841 -
Vvi13g0388 763 Pfam Xylanase inhibitor C-terminal 582 748 IPR032799 -
Vvi13g0388 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 223 IPR013083 -
Vvi13g0388 763 FunFam Aspartic proteinase PCS1 381 554 - -
Vvi13g0388 763 MobiDBLite consensus disorder prediction 281 300 - -
Vvi13g0388 763 Pfam Protein of unknown function (DUF1117) 239 335 IPR010543 -
Vvi13g0388 763 Pfam Ring finger domain 175 217 IPR001841 -
Vvi13g0388 763 Pfam zinc-ribbon 2 33 IPR039525 GO:0061630
Vvi13g0388 763 Gene3D Acid Proteases 384 553 IPR021109 -
Vvi13g0388 763 ProSiteProfiles Peptidase family A1 domain profile. 390 748 IPR033121 -
Vvi13g0388 763 FunFam E3 ubiquitin-protein ligase RING1-like 138 223 - -
Vvi13g0388 763 Pfam Xylanase inhibitor N-terminal 392 553 IPR032861 -
Vvi13g0388 763 MobiDBLite consensus disorder prediction 284 298 - -
Vvi13g0388 763 SUPERFAMILY Acid proteases 391 752 IPR021109 -
Vvi13g0388 763 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 405 416 IPR001969 GO:0004190|GO:0006508
Vvi13g0388 763 FunFam Aspartic proteinase PCS1 558 756 - -
Vvi13g0388 763 SUPERFAMILY RING/U-box 156 223 - -
Vvi13g0388 763 CDD RING-H2_RNF126-like 176 217 - -
Vvi13g0388 763 MobiDBLite consensus disorder prediction 317 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0388 Vvi-Chr13 3282422 3293900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0388 115 229 C3H Transcription Factor Family AT5G01980 45.217 4.33e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0388 - - vvi:100251245 802.742