Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0386 ATGAGTTTTGTTTTTCGAGGGAGTCGAGCAGACATAGAAAGTGGATTTCCAGGATTTATTCCTGAGAGGCGTGCAGTGCGTGTTCATGCAGCTCGCCCTGTTAATACCAACTCGCTTGCTTTTCTGGTCACAGTTCTTTTGCTGTTCATGATACTAAACTCACACCAGATGTCACCTAACTTTCTGATCTGGCTGGTTCTTGGCATCTTTCTGATGGCCACAACCCTCAGGATGTATGCAACTTGTCAGCAACTTCAAGCTCAGGCACAAGCTCATGCTGCAGCAGCCAGTGGTCTTCTTGGTCACACAGAATTGCGGTTGCATATGCCACCATCCATAGCACTTGCAACAAGAGGGCGTTTACAAGGCCTTAGGCTCCAACTTGCACTTCTTGACAGGGAATTTGATGACCTAGATTATGAAACTTTGAGAGCACTGGATTCTGAGAATGTACCTACAACTCCTTCAATGAGCGAGGAAGAGATAAATGCTCTTCCTGTGCACAAGTACAAGGTTGCTGGCACTCAAGGTGGTGGCTCATCAATGCAACAGGGCTCATCTTCGGCCTCAGCTGAGAAGAAACAAGACATTAACAACGCGGTTGCGAGCACAAAGGCCCCAGATGACGAATTGACTTGCAGTGTTTGCTTGGAGCAAGTTAATGTGGGAGAATTAATCCGTAGCTTACCATGTTTGCATCAGTTCCATGCAAACTGCATTGACCCATGGCTAAGGCAACAGGGAACATGTCCTGTGTGTAAATTTAGAGCAGCACCAGGTTGGCAAGAAAATGGACAAGGTGGAATGGATGCTTCTTACATGGTTTGA 828 0.4662 MSFVFRGSRADIESGFPGFIPERRAVRVHAARPVNTNSLAFLVTVLLLFMILNSHQMSPNFLIWLVLGIFLMATTLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSENVPTTPSMSEEEINALPVHKYKVAGTQGGGSSMQQGSSSASAEKKQDINNAVASTKAPDDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAAPGWQENGQGGMDASYMV* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0386 275 SMART ring_2 213 253 IPR001841 -
Vvi13g0386 275 SUPERFAMILY RING/U-box 205 257 - -
Vvi13g0386 275 MobiDBLite consensus disorder prediction 176 195 - -
Vvi13g0386 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 260 IPR013083 -
Vvi13g0386 275 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Vvi13g0386 275 MobiDBLite consensus disorder prediction 173 195 - -
Vvi13g0386 275 Pfam Ring finger domain 212 254 IPR001841 -
Vvi13g0386 275 CDD RING-H2_PA-TM-RING 212 254 - -
Vvi13g0386 275 PANTHER TARGET OF ERK KINASE MPK-1 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0386 Vvi-Chr13 3261193 3269087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0386 1 275 C3H Transcription Factor Family AT3G55530 79.710 3.43e-150 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0386 K16283 - vvi:100246103 496.123