Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0376 ATGGTCATGGATCGATCTTTGAGTCGATTATACGGGTCAATCAATGGAATCAAGTTCAGTGAAGACTCTGTTTCAATTTTATCTGATCAGAATCTTAGTAATGGACCGGGATCGGAGGTGCCGATTGGTTGTGTAGATATTCCACCATTCCCACCTGATCCAGGCTCTAGCAATAAAGCCACGTGGTCGAGTGTGCGCAGGGAGGAAGATCCTCATGAGGACTGTGATTTTAGTGATGTAGTTCTTAAGTACATAAACGAGATGCTTATGGAGGAAAAAATAGAAGAAAAAACTTGCATGTTTCAGGCGTCTTCAGCACTTCAAACCACTGAGAAATCATTCTATGATGTTATTGGGGAGAAGTATCCTCCTCCAATTGATCACCGTTTGATGAAATCCTCACCTTATGTGGAGGAAAATCAAGAAAACTCGTCTGAAAATAGTAGTGGGAAATGCAGTAGTTATAGTAGTATCACTAGTTCTACTAGTGATGGTAACTTGGTGGAACATGTGTGGAATGGTGATCTTGGAGAGTGTAAGTCAGCTCATAGTGCTTCCCAGTCCACTTCTCAATCTTTTTCCAGTTCTTCAAATGGTGCCAGTAATATTGCAAATGGTTATGTGGATTCTCCAATGAGTACCCTGAGGATTCCGGACATATTTAGTGACAATGAAGCTGCTTCACTGTTCAGGAAGGGGGTTGAGGAAGCTAGTAAATTCCTTCCAAATAGTACTGGCTTGTTTGTTGATTTGGTGACAGAGAATAGTAGGGGGTTAGTGAAGCAAGATCCTAAGGATGTGGTTGTTAAGATGGAGAAGAAACACAGAAATGAGTACTTTACAGGTGTGTCGAGGGGAAAGAAGAATCCTTATCCAGAGGATTTGGATTCAGAGGAAGAGAGGAATAGCAAGCAGTCAGCGGTTTATAATGAAATGACTGTGACATCAGAAATGTTTGATCTGGTCTTGCTATGTAACGAAGGGAAAGGTGAAGCTGCTCTTCGTGAGTCTTTTCAAAATGAAGCAAACAAAACTGTGCAGCAGGATGGTCAATCAAAAGGATCCAATACTGGAAAATCCCGTGGTAGGAAGAAAGGTGGCGGCAAGGACTTGGTGGACTTGACAACTCTACTGACTCTTTGCGCTCAAGCAGTTGCTGCTGATGATTGGAGGACAGCAAATGAGCAACTAAAGCAGATCAGACAGCATGCTTCTCCTACGGGTGATGGAAGGCAAAGAATGGCTCACTATTTTGCCAATGGTCTTGAGGCACGCATGGCTGGCTCTGGAACTCGGATTTATAAAGCAGTCATTACTAAGCCAACATCAGCTGCTATTGTCTTGAAAGCTTACCATCTACTTCTTGCTGTGTGCCCGTTTAAGAAGCTTCCTAATTTCTTCTCAAATAAGACAATTACAAAAGTGGCAGAGAGAGCAGCAAGGCTCCACATTGTTGATTTTGGTATTCTCTATGGTTTCCAATGGCCTTCTCTCATACAACGTCTCGCTTCTAGGCCTGGTGGACCTCCCAAGCTTCGGATTACTGGAATTGATCTTCCACAACCAGGCTTCCGACCGGCAGAAAGGGTTGAGGAGACAGGACATCGGTTAGCAAATTATGCGAGGAGTTTCAACGTTCCATTTGAGTTCAATGCTATAGCGCAGAAGTGGGAAACAATTCAAGTTGAGGATCTTAAAATTGACAGTGATGAGCTGCTTGTTGTAAACTGTAATTGTAGATTTAGAAACCTACTTGATGAAACTGTAGTTGTGGAGAGTCCTAGGAATATTGTTCTGAATCTGATCAGGAAGATGAATCCTGATATTTTCATACAGGGAATTGTGAATGGGGGCTATGGTGCTCCCTTCTTTCTGTCACGATTCCGAGAGGCTCTCTTTCACTTTTCTGCCTTGTTTGATATACTTGAGGCTACTGTGCCTCGTCAGACTTTGGAGAGGACGCTGATTGAGAGAGAGATATTTGGTTGGGATGCAATGAACGTCATCGCATGTGAGGGCTCAGAAAGGATTGAGAGGCCAGAGACATACAGGCAGTGGCAAATTCGTAACCTGAGGGCTGGGTTTAGGCAGCTCCCTTTGGACCAGGAGATTTTTAATATTGCAAAAGAGAAGGTCAAATTATGGTATCACAAAGACTTTGCGGTTGACCAAGATGGCCAGTGGTTGCTACAAGGATGGAAGGGGCGCATTATTTTTGCAATCTCTTCTTGGAAGGCTGTTCAGTAA 2247 0.4335 MVMDRSLSRLYGSINGIKFSEDSVSILSDQNLSNGPGSEVPIGCVDIPPFPPDPGSSNKATWSSVRREEDPHEDCDFSDVVLKYINEMLMEEKIEEKTCMFQASSALQTTEKSFYDVIGEKYPPPIDHRLMKSSPYVEENQENSSENSSGKCSSYSSITSSTSDGNLVEHVWNGDLGECKSAHSASQSTSQSFSSSSNGASNIANGYVDSPMSTLRIPDIFSDNEAASLFRKGVEEASKFLPNSTGLFVDLVTENSRGLVKQDPKDVVVKMEKKHRNEYFTGVSRGKKNPYPEDLDSEEERNSKQSAVYNEMTVTSEMFDLVLLCNEGKGEAALRESFQNEANKTVQQDGQSKGSNTGKSRGRKKGGGKDLVDLTTLLTLCAQAVAADDWRTANEQLKQIRQHASPTGDGRQRMAHYFANGLEARMAGSGTRIYKAVITKPTSAAIVLKAYHLLLAVCPFKKLPNFFSNKTITKVAERAARLHIVDFGILYGFQWPSLIQRLASRPGGPPKLRITGIDLPQPGFRPAERVEETGHRLANYARSFNVPFEFNAIAQKWETIQVEDLKIDSDELLVVNCNCRFRNLLDETVVVESPRNIVLNLIRKMNPDIFIQGIVNGGYGAPFFLSRFREALFHFSALFDILEATVPRQTLERTLIEREIFGWDAMNVIACEGSERIERPETYRQWQIRNLRAGFRQLPLDQEIFNIAKEKVKLWYHKDFAVDQDGQWLLQGWKGRIIFAISSWKAVQ* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0376 748 Pfam GRAS domain family 375 745 IPR005202 -
Vvi13g0376 748 MobiDBLite consensus disorder prediction 281 304 - -
Vvi13g0376 748 MobiDBLite consensus disorder prediction 341 357 - -
Vvi13g0376 748 MobiDBLite consensus disorder prediction 341 368 - -
Vvi13g0376 748 MobiDBLite consensus disorder prediction 137 157 - -
Vvi13g0376 748 ProSiteProfiles GRAS family profile. 365 745 IPR005202 -
Vvi13g0376 748 MobiDBLite consensus disorder prediction 289 304 - -
Vvi13g0376 748 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 292 735 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0376 Vvi-Chr13 3182304 3184550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0376 81 744 GRAS Transcription Factor Family AT1G07530 50.501 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi13g0376 GRAS 3.4e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0376 - - vvi:100241120 1398.26