Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0375 ATGGATCGACCCTCGAGGGGAATCGAATTCAGTGAAGACTCAGTTCCATTGTTATCGGGTGAGAATCTTCCCGGTGGGTTGAAATTTCAGGAGCCGTTTTTATATCAAAATAATATAGATACCGTACCAATTTCTCTGCACCCGAGTGGTAGTAATTTAGCCTCGTGGCCGTGTGCGGGTGTGGAGGAAGATCCTCTTGCGGACTCTGACTTTAGTGATATAGCTCTCAAGTACCTAAGCCAGATACTAATGGAGGAAGACCTAGAAGAAAAGACTGGCATGTTTAAGGAGTCTTTGGCGCTTGAGGCCACTGAGAAATTGTTCCATGACATCATTGGGGAGATATATCCTCCTCCAGGCGAGGAAAATTGTGGCAACCCATCTGAAAATGATAGTATAGATTTTAGTACTTGTAATAGTAATGATACTAGAGATGGTAACTTAGTGGAACCAGGGAGGAATTATGATAAGTCTCCACATATTGCTTCCCAGTCAACTTCTCATTCTTTAAGTTCTTCAAGCAGCCCAAATATTGTCTTAGATGGTTTTGTCGATGTTCCAATGAGTACCCTTAAGGTTCCCAATATATTTAATGACAGAGAATCTGTTTTGCAGTTCAGGAGGGGGTTTGAGGAAGCTAGTAAATTCCTTCCAAATCGTTCTGATTTGTCAGTTGATTCGGCAAACCATAATACAGAACTGTTAGTCCCTAATAATGTAATGAATAAAGTGGAGAAGAAGCATGGAGGGGAGCATTTTACAGATGGGTCAAGGGGAAAGAAGAAGACTCATCGAGATTTGGAATGTGAGGAAGTGAAGAGTAACAAGCAGAGTGCTGTTTATAATGAAATGACACTGACATCAGAAATGTTTGATCGAGTATTACTCTGTGATGCAGATGCATATGAAGCTGCCCTTCGTGAATCCTTTCAAAATGAAACAAGCAAGACTCTGCAGCAGGATGGTCAATCAAAAGGATCTAATGCTGGAAAGCCCCGAGGTTGGAAGAAGGGTGGGAAAAAGGATTTGGTGGACTTGAGAAGTCTATTAGCTCTTTGTGCACAAGCTGTGGCGGATGATGATCAGGTGAGCGCAGGTAAGCAACTGCAGCAGATCAGGCAGCATGCATCTCCAATGGGTGATGGGATGCAGAGACTGGCTCACTATTTCGCTAATGCACTTGAGGCACGCTTGGATGGCTCTGGATCCCAGATTTGCAAAGCGGTTATTACCAAACCATCAGGTGCCCATTTCTTGAAAGTTTACCACCTACTTCTTGCAGTGTGCCCCTTTTTAAAAGTCCTTAATTTCTTCACCAATAAGACAATCACAAAAGCAGCTGAGAAAGCAGAGAGGCTCCATATTATTGATTTTGGTGTTCTCTACGGTTTCTCATGGCCTTCACTTTTACAACGTCTCTCAACTAGGCCTGGTGGGCCTCCCAAGCTTCGGATTACCGGGATTGATTTTCCAGAACCTGGCTTCCGACCGGCACAAAGGGTTGAAGAGACAGGGCGTTGGATAGCAAATTATGCCAAGAGTTTCAATGTCCCATTTCAGTTCAATGCCATTGCACAAAAGTTTGAAACTGTTCAAGTTGGGGATCTCAAGATCGGTAGCGAGGAGGTTGTTATAGTGAGGTGTCGATATCGATTTAAAAACCTCCTGGATGAAACAGTGGTGGCAGAGAGTCCAAGAAACATAGTTCTGAATCTGATCAGGAAGATGAACCCAGATATTTTCATACACGCCGTCGTGAATGCGGCCTGCGATGCCCCCTTTTTCATGACACGATTCCGAGAGGCTCTCTTCCACTATTCTGCTTTGTTCGACATGCTTGAGAATAATGTGCCCCGCAACATTTTGGAGAGGGTGGTGATCGAGAGAGAAGTATTTGGCCGAGAGATAATGAACATGATTGCGTGTGAGGGACCAGAGAGGATCGAGAGGCCAGAGACGTACAAGCAATGGCAGATCCGTAATGAGAGGGCTGGATTTAGGCAGCTCCCTTTGGACCAGGAGATTGTTAATATAGCAAAGGAGAGAGTGAAATCATGCTACCACAAAGATTTTATGATTGATGAAGACGGCCAATGGTTGCGACAGGGGTGGAAGGGACGGATTATTTTTGCTATCACTTCTTGGAAACCTGCTTCCTAA 2160 0.4431 MDRPSRGIEFSEDSVPLLSGENLPGGLKFQEPFLYQNNIDTVPISLHPSGSNLASWPCAGVEEDPLADSDFSDIALKYLSQILMEEDLEEKTGMFKESLALEATEKLFHDIIGEIYPPPGEENCGNPSENDSIDFSTCNSNDTRDGNLVEPGRNYDKSPHIASQSTSHSLSSSSSPNIVLDGFVDVPMSTLKVPNIFNDRESVLQFRRGFEEASKFLPNRSDLSVDSANHNTELLVPNNVMNKVEKKHGGEHFTDGSRGKKKTHRDLECEEVKSNKQSAVYNEMTLTSEMFDRVLLCDADAYEAALRESFQNETSKTLQQDGQSKGSNAGKPRGWKKGGKKDLVDLRSLLALCAQAVADDDQVSAGKQLQQIRQHASPMGDGMQRLAHYFANALEARLDGSGSQICKAVITKPSGAHFLKVYHLLLAVCPFLKVLNFFTNKTITKAAEKAERLHIIDFGVLYGFSWPSLLQRLSTRPGGPPKLRITGIDFPEPGFRPAQRVEETGRWIANYAKSFNVPFQFNAIAQKFETVQVGDLKIGSEEVVIVRCRYRFKNLLDETVVAESPRNIVLNLIRKMNPDIFIHAVVNAACDAPFFMTRFREALFHYSALFDMLENNVPRNILERVVIEREVFGREIMNMIACEGPERIERPETYKQWQIRNERAGFRQLPLDQEIVNIAKERVKSCYHKDFMIDEDGQWLRQGWKGRIIFAITSWKPAS* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0375 719 MobiDBLite consensus disorder prediction 125 147 - -
Vvi13g0375 719 MobiDBLite consensus disorder prediction 118 175 - -
Vvi13g0375 719 MobiDBLite consensus disorder prediction 310 327 - -
Vvi13g0375 719 MobiDBLite consensus disorder prediction 248 269 - -
Vvi13g0375 719 MobiDBLite consensus disorder prediction 310 338 - -
Vvi13g0375 719 ProSiteProfiles GRAS family profile. 337 716 IPR005202 -
Vvi13g0375 719 Pfam GRAS domain family 346 716 IPR005202 -
Vvi13g0375 719 MobiDBLite consensus disorder prediction 158 175 - -
Vvi13g0375 719 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 278 705 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0375 Vvi-Chr13 3178344 3180503 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0375 76 719 GRAS Transcription Factor Family AT1G07530 45.124 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi13g0375 GRAS 8.4e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0375 - - vvi:100263396 1420.99