Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0374 ATGCTTATGGAGGAAGACGTAGAAGAGAGGAATTGCATGTTTCAAGAGTCTTTGGCGCTTGAAGCCACTGAGAAATTGTTTTATGACATTATTAGGGAGAAGTATCTTCCTCCAGATGATCACCAGACAGCCCCTTTCATTGAGGAAAATTCTGGCAATTCAGATCAAAATGGTAGTATAGATTTCAGTACTTATAGTAGAAATGCTACTAGTGATGGTAACTGCGTGGAACTGGGGAGGAATTTTGATGTTGGAGAGTATAAATCCCCTCATGTTGCCCCCCAGCCCACTTGTCAGTCTTCTTTCAGTTCTTCAAGCAGTGCCAAAAGGGTTCCTAATATATTTAATGACAGCCCTAATAATGTGGTAGATAAGGTGAAGAAGAAGCATGCAGATGAGTATTTTAGAGACGGGTGGAGGGGAAAGAAGAAGTCTCATCCATGGGATTTGGAATCCAAAGAAGAGAGGAGTAGCAAGCAAGCTGCTTTTTATAATGGAATTACTGTGACATCAGAGATGTTTGATCGGGTGTTGCTATGTGGTCCAGAGGAAGATGAAGATGCTCTACGTGAAACCTGGCAAAATGAAACAACCAAGACTCTGCAGCAGGATGGTCAATCAAAAGGATCTGGAAAGTCCCATGGTAGGACGAAGGGCGGAAAAAAGGATTTGGTGGACTTCAGAAGTCTATTGACTCTTTGTGCACAAGCAGTTGCAGCTGACGATCGGACGAGCGCAAATAAGCAACTGAGGCAGATCAGACAGCATGCTTCTTCAATGGGTGACGGGATGCAGAGACTGGCTCACTATTTTGCCAACTCCCTTGAGGCACGCTTGTCTGGTTCCGGGGCCCAGATGTACAAAGCCATAACTACCAAACCATCAGCTGCCAATGTCTTGAAAATTTACCACCTACTTATTGTGGTGAGCCCCTTTGTGAAGGTCACTAATTTCTTCTCAAATAAGTCAATTGCAGAAGTAGCTGAGAAATCAGAGAGGCTCCATGTTATCGATTTTGGCATTCTCTATGGTTTCTCATGGCCTTCACTCATACAACGTCTCTCATCTAGACCAGGTGGGCCTCCCAAGCTTCGAATTACTGGGATTGATCTTCCAGAACCCGGTTTCCGACCTGCAGAAAGGCTTGAAGAGACAGGGCGTCGGTTAGCAGATTATGCCAAGTGTTTCAATGTTCCTTTTGAGTTCAACGCCCTAGCACAAAAGTTCGAAACGGTTCAAATTGAGGATCTCAAGCTAGACAATGACGAGGTTCTTGCGGTGAGATCCCGGTATAGATTTGGAAACCTCCCTGATGAAACCGTGGTAGCAGAGAGTCCAAGAGATAGTGTTCTGACCCTGATCAGGAAAATGAACCCAGATATTTTTATACTTGCCATTGTGAATGCGGCCTGTGATACCCCCTTCTTTATGACTCGATTCCGAGAGGCTCTTTTCCACTATTCTGCGTTGTTCGATATGCTTGAGGAGAATGTGCCCCACAACATTTTGGAGAGAATGCTGTTGGAGAGAGAAGTGTATGGTCAAGAGATAATGAACATCATTGCATGTGAGGGCTTAGAGAGGATTGAGAGGCCAGAGACATACAAGCAGTGGCAGGTTCGTAATGAGAGGATTGGGTTTAGGCAGCTCCCTTTGGACCGGGAGGTTGTTGAGGAGGCAAAGGAGTGGGTGAAATCATGCCTCCACAAGGATTTTATTATCGATGAAGATGGGCAATGGCTGAGGCTAGGGTGGAAGGGACGCATTACTCATGCCATGTCTTCTTGGAAGCCTGCTTGTTAA 1803 0.4531 MLMEEDVEERNCMFQESLALEATEKLFYDIIREKYLPPDDHQTAPFIEENSGNSDQNGSIDFSTYSRNATSDGNCVELGRNFDVGEYKSPHVAPQPTCQSSFSSSSSAKRVPNIFNDSPNNVVDKVKKKHADEYFRDGWRGKKKSHPWDLESKEERSSKQAAFYNGITVTSEMFDRVLLCGPEEDEDALRETWQNETTKTLQQDGQSKGSGKSHGRTKGGKKDLVDFRSLLTLCAQAVAADDRTSANKQLRQIRQHASSMGDGMQRLAHYFANSLEARLSGSGAQMYKAITTKPSAANVLKIYHLLIVVSPFVKVTNFFSNKSIAEVAEKSERLHVIDFGILYGFSWPSLIQRLSSRPGGPPKLRITGIDLPEPGFRPAERLEETGRRLADYAKCFNVPFEFNALAQKFETVQIEDLKLDNDEVLAVRSRYRFGNLPDETVVAESPRDSVLTLIRKMNPDIFILAIVNAACDTPFFMTRFREALFHYSALFDMLEENVPHNILERMLLEREVYGQEIMNIIACEGLERIERPETYKQWQVRNERIGFRQLPLDREVVEEAKEWVKSCLHKDFIIDEDGQWLRLGWKGRITHAMSSWKPAC* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0374 600 MobiDBLite consensus disorder prediction 196 221 - -
Vvi13g0374 600 ProSiteProfiles GRAS family profile. 218 597 IPR005202 -
Vvi13g0374 600 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 172 586 IPR005202 -
Vvi13g0374 600 MobiDBLite consensus disorder prediction 196 213 - -
Vvi13g0374 600 MobiDBLite consensus disorder prediction 93 116 - -
Vvi13g0374 600 Pfam GRAS domain family 228 597 IPR005202 -
Vvi13g0374 600 MobiDBLite consensus disorder prediction 46 65 - -
Vvi13g0374 600 MobiDBLite consensus disorder prediction 43 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0374 Vvi-Chr13 3173137 3175048 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0374 1 598 GRAS Transcription Factor Family AT2G37650 44.427 6.88e-175 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi13g0374 GRAS 2.8e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0374 - - vvi:100258258 1078.93