Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0372 ATGGTCATGGATCAACCTTTGCGCAGATTATATCAGTCAATGAATGGAATCAAACTCGATAAAGCCTCCTCTACAATTTTATTGGGTCAGAATTTTACGGATGGGTTCAAATTGCAGGGGCCATATTTAGATAAAAATGATGTAGATGTTCCACCATGGCTGCCTGATACGAGCTCTGGTAATTTACCCTCATGGTCAAGTGCGGGTGTGGAGGAAAACCTACATGAGGACTGTGATTTTAACGATGTGGCTCTTAAGTACATAAGCCAGATACTTATGGAGGAAGACATGGAAGAGAAGACTTGCATGCTTCAGGAGTCTTTGGCGCTTGAAGCTACTGAGAAATCGTTCTACAACGTTATTGGAGAGAATTACCCTCCTTCAATTGATCATCATCGCGCCTCTTCCATTGATGAAATTCATGAAGACCAATATGAAAATAATTGTAGTAGTTTTGGTGGTGATAATTTGGTGGAACCTGGGTGGAATTGGGATGTTGGAGAGTATAGATACCCTCATATGGCTTCTCAATCTACTTCTTCTTCTTTCAGATCTTCAAATAGTGCCGATAGTAAAGTAGATGGTTTTGTGGATGAGCCTAAGAGTATCCTAGAGATTCCCAATATATTCAGTGGTAGTGAGTCTAGTTCACAGTTCAGGAGGGGGGCTGAGGAAGCTAGGAAATTCCTCCCAAATGGTAATGGCTTGTTTGTCGGTGTGGTAAATAACCTTTCTGGGTTGTTAGTTGGTGAAGTGAAGCAAGGTCATGAGGATATGGGATTCAAGGTGGAGAAGAAGCATCCAAATGAGCACTTTGCAGAGGGGTCAAGGGGAAAAAGGAATTCTCATCCTGAGGATTTGGATGCAGAGGAGGATAGGAACACCAAGCTGTCTGCCATTTTTGATGAATTGACAGTCAGATCAGAAATGTTGGATCAGGTTTTGCTATGTGATGCAGTGAAAAGTGAAGCCGCTCTTCGCGAATCCTTGAAAAATGAAGCAAGCAAGACTCTGCAGCAGCAGGAGTGTCAATCAAAAAGATCCAATTTGGGAAAATCCCGTGGTAGGAAAAAGGGTGGAAAAAAGGATGTGGTGGATTTGAGCAATCTGTTGACTCTATGTGCACAAGCTGTTGTTGCTGGTAATCAGAGGAGTGCCAATGATCAATTGAAGCTGATCAGACAGCATGCTTCTCCTATGGGTGATGGGATGCAGAGAATGGCATATTATTTTGTCAATGGCCTTGAGGCACGCTTGAGAGGCTCTGGAACTGAGATTTACAAAGGTGTCTTAACTAGGGGAACATCAGCTGCCAATATCTTGAAAGCTTACCACCTATTTCTTGCCATATGCCCCTTTAAGAAGCTTCTTAATTTCTTCTCAAATACCACCATTAGAAAATTAGCTGAGAAAGCAGAGAGTCTCCATATCATAGATTTTGGTATTCTCTATGGTTTCCAATGGCCTTCCCTCATACAATGTCTCTCATCTAGGCCTGGTGGACCTCCCAAGCTTCGAATTACTGGGATTGATCTTCCAAAACCAGGTTTCCGACCAGCAGAAAGGGTTCAAGAGACAGGCCGTCGGTTGGCAAACTATGCAAAGAGTTTCAATGTTCCATTTGAGTTCAATGCCATAGCCCAAAAGTGGGAAACAATTCAGGTTGAGGATCTCAAGATTGATACTGAGGATGTGCTTGTTGTGAACTGTCATTGTAGATTTAGAAACCTATTGGATGAAACCGTGACGGTGGAGAGCCCAAGGGATACTGTCCTGAATCTGATCAGGAAGCTGAATCCAGTTGTTTTCATACAAGGGATTGTGAATGGGGGCTATGGCGCCCCCTTCTTCAGGACACGATTCCGCGAAGCTCTCTTCCACTATTCTGCCTTGTTTGATATGCTTGAGCATATCGTGCCCCGCGAGAGATTGGAGAGGACAGTGATTGAGAGAGAGTTCTTTGGGTGGGAGGCAATGAATGTCATCGCATGCGAGGGCTCAGAAAGGATCGAGAGGCCAGAGAGTTACAGGCAGTGTCAGTTTCGCAACATGAGAGCTGGGTTTATGCAGCTTCCTCTGGACGAGGAGATTGTCAACAAAGCAAAGGAGAAGCTGAAGTTGTGCTATCACAAGGACTTTATACTTTACGAAGACGGCCCGTGGTTGCTACAAGGGTGGAAGGGAAGAATGCTTTTTGCAATCTCTTCTTGGAAGCCTGCTTAA 2223 0.4408 MVMDQPLRRLYQSMNGIKLDKASSTILLGQNFTDGFKLQGPYLDKNDVDVPPWLPDTSSGNLPSWSSAGVEENLHEDCDFNDVALKYISQILMEEDMEEKTCMLQESLALEATEKSFYNVIGENYPPSIDHHRASSIDEIHEDQYENNCSSFGGDNLVEPGWNWDVGEYRYPHMASQSTSSSFRSSNSADSKVDGFVDEPKSILEIPNIFSGSESSSQFRRGAEEARKFLPNGNGLFVGVVNNLSGLLVGEVKQGHEDMGFKVEKKHPNEHFAEGSRGKRNSHPEDLDAEEDRNTKLSAIFDELTVRSEMLDQVLLCDAVKSEAALRESLKNEASKTLQQQECQSKRSNLGKSRGRKKGGKKDVVDLSNLLTLCAQAVVAGNQRSANDQLKLIRQHASPMGDGMQRMAYYFVNGLEARLRGSGTEIYKGVLTRGTSAANILKAYHLFLAICPFKKLLNFFSNTTIRKLAEKAESLHIIDFGILYGFQWPSLIQCLSSRPGGPPKLRITGIDLPKPGFRPAERVQETGRRLANYAKSFNVPFEFNAIAQKWETIQVEDLKIDTEDVLVVNCHCRFRNLLDETVTVESPRDTVLNLIRKLNPVVFIQGIVNGGYGAPFFRTRFREALFHYSALFDMLEHIVPRERLERTVIEREFFGWEAMNVIACEGSERIERPESYRQCQFRNMRAGFMQLPLDEEIVNKAKEKLKLCYHKDFILYEDGPWLLQGWKGRMLFAISSWKPA* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0372 740 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 311 732 IPR005202 -
Vvi13g0372 740 MobiDBLite consensus disorder prediction 265 291 - -
Vvi13g0372 740 Pfam GRAS domain family 368 738 IPR005202 -
Vvi13g0372 740 MobiDBLite consensus disorder prediction 337 361 - -
Vvi13g0372 740 ProSiteProfiles GRAS family profile. 358 738 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0372 Vvi-Chr13 3155491 3157713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0372 85 740 GRAS Transcription Factor Family AT1G07530 46.076 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi13g0372 GRAS 6.9e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0372 - - vvi:100242700 1412.13