Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0371 ATGGATGAACATTTGAGCGGATTATACCCGTCCGTGAATGGAATCAAGTTTAGTGAAGTCTACGGTTCAATTTTGTCGGGTGAGAATCCCAGTAGTGGGTTGGGATTGCAGGTGCCTTTTTTAGAGCAAAACAATGTATTCATTCCGCCATTTCAGCCCGATCCCAGCGGTGGTAATGTGGCCTCATGGTCGAGTGTGGGCGTGGAGGAAGATCCTCAGGAGGACTGTGATTTTAGTGATGTGGTTATTAGGTACGTAAGCCAATTGCTTATGGAGGAAGACGTGGAAGAGAAGACCCGCATGTTTCAGGAATCTTTGGCTCTTGAAGCCACTGAGAAATCGTTCTATGAAGTTATTGGGAAGGAGTATCCTGCTTCAAAGGATCACCACCTGTCTCCTAGCGCGGAGGAAAATCATGAAAACCCCACTGCAAATTATGGTGTTTATTCTAGTAGTACTACTAGTTATGGTAAATCGGTGGAAACTGGGTGGAATTTTGATTATGAGCAGTACAAATCCGGTCAGATTGATTTTCAGTCCACTTCTCAGTCTTCTTTCAGCTCTTCAATTAGCCCCAGCAATATTGCTTTCCAGTGCACTTCTCACTCTTCTTTCAGCTCATCAAACAGCCCCAATACTACCATAGATGGTTTTGGGGATCGTCCAATGAGTATCTTTAAGGTCCCCGATATATTTAATGATAGCGAGTCGGTTTTGCATTTCAAAAGGGGGCTTGAGGAAGCAAGTAGATTCCTTCCAAATGGTAATGGTTTGTTTGATCACATGGCGAAGGACAATTCGGGGCTGCTAGTTCATGGGATGAACAAAGGCCCCAATGAAGCGGTAGTTGAGATGGAGAAGCATGCTAATGGGTATTTCATGGGTGAGTCGAGGGGTAAGAAGAATTCTCATTTGGGGCATTTGGATTCTGAGGAAGAAAGGAGTAACAAACAGTCTGCAGTTTGTGATGAAGTGACAGTAACATCAGAAATGTTCGATCGGGTGTTGCTATGTGATGCAGATAAAGGTGAAGCTGCTCTCCGTGAATCCTTGCAAAATGAGGCAAGTAAGACTGTGCAGCAGGAGGGTGGATTGAAAGGATCTAATGGTGGAAGGTCTCGTGGATGGAAAAAGGGTGGTAAAAAGGATTTGGTGGATTTGAGAACTCTCTTGACTCTTTGCGCACAAGCTGTTGCAGCTGATGATCGGAGGAGCGCAAATGAGCAACTGAAGCAGATCAGACAACATGCTTGTCCTATGGGTGATGGGGTGCAGAGAATGGCTTACTATTTTGCCAATGGCCTTGAGGCTCGCTTGGCTGGTTCTGGTACTCAGATTTACAAAGGCATCCTTACCAAGCCATCCGCTGCCAATGTCTTGAAGGCTTACCATCTACTTCTTGCTGTTTCCCCATTTAAGAAGGTCACTAATTTTGTCTTAAATAAGACAATTACAAAGGTAGCAGAGAAAGCAGCCCGACTCCATATTATTGATTTTGGTATTTTCTATGGTTTCCAATGGCCTTCCTTCATACAGCGCCTCTCATCTAGGCCTGGGGGACCTCCCAAGCTTCGGATTACTGGAATTGATCTTCCACAACCAGGCTTCCGACCTGTAGAAAGAGTTGAAGAGACAGGGCGTCGGTTAGCAAATTACGCCAGGAGTTTTAATGTTCCATTTGAGTTCAATGCCATAGCGCAAAAATGGGAAACAATTCAAATTGAGGATCTCAAAATCAACACTGGGGAGCTGGTTGTCGTGAACTGTCGATATAGATTTAGAAGCCTACTTGATGAAAGTGTGGTAGTGGAGAGTCCAAGGAATATTGTTCTGAATCTGATTAGGAAGATGAATCCAGATATTTTCATACAGGGGATTGTGAATGGAGCCTATGGCGTCCCATTCTTTATGACACGATTCCGAGAGGCTCTCTTCCACTTTTCTGCTTTATATGATATGCTTGAGACTAATGTCCCCCGCCAGAGTTATGAGAGGAGACTGATTGAGAAAGAATTGTTTGGGTGGGAGGCTATGAATGCTATTGCATGTGAAGGCTCCGAGAGAATTGAGAGACCAGAGACATACAAGCAGTGGCAGGTTCGTAATGAGAGGGCTGGGTTCAGGCAGCTCCCTTTGGACCAGGAGATTGTTAAGATAGCGAAAAAGAGGGTGAAATCATGCTACCACAAAGATTTTATGATGGATGAAGATGGGCAATGGTTGCTACAGGGGTGGAAGGGACGCATCATTTATGCAATCTCTTCTTGGAAGCCTGCTCATTAA 2283 0.4472 MDEHLSGLYPSVNGIKFSEVYGSILSGENPSSGLGLQVPFLEQNNVFIPPFQPDPSGGNVASWSSVGVEEDPQEDCDFSDVVIRYVSQLLMEEDVEEKTRMFQESLALEATEKSFYEVIGKEYPASKDHHLSPSAEENHENPTANYGVYSSSTTSYGKSVETGWNFDYEQYKSGQIDFQSTSQSSFSSSISPSNIAFQCTSHSSFSSSNSPNTTIDGFGDRPMSIFKVPDIFNDSESVLHFKRGLEEASRFLPNGNGLFDHMAKDNSGLLVHGMNKGPNEAVVEMEKHANGYFMGESRGKKNSHLGHLDSEEERSNKQSAVCDEVTVTSEMFDRVLLCDADKGEAALRESLQNEASKTVQQEGGLKGSNGGRSRGWKKGGKKDLVDLRTLLTLCAQAVAADDRRSANEQLKQIRQHACPMGDGVQRMAYYFANGLEARLAGSGTQIYKGILTKPSAANVLKAYHLLLAVSPFKKVTNFVLNKTITKVAEKAARLHIIDFGIFYGFQWPSFIQRLSSRPGGPPKLRITGIDLPQPGFRPVERVEETGRRLANYARSFNVPFEFNAIAQKWETIQIEDLKINTGELVVVNCRYRFRSLLDESVVVESPRNIVLNLIRKMNPDIFIQGIVNGAYGVPFFMTRFREALFHFSALYDMLETNVPRQSYERRLIEKELFGWEAMNAIACEGSERIERPETYKQWQVRNERAGFRQLPLDQEIVKIAKKRVKSCYHKDFMMDEDGQWLLQGWKGRIIYAISSWKPAH* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0371 760 MobiDBLite consensus disorder prediction 300 317 - -
Vvi13g0371 760 ProSiteProfiles GRAS family profile. 378 757 IPR005202 -
Vvi13g0371 760 MobiDBLite consensus disorder prediction 351 367 - -
Vvi13g0371 760 Pfam GRAS domain family 387 757 IPR005202 -
Vvi13g0371 760 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 309 751 IPR005202 -
Vvi13g0371 760 MobiDBLite consensus disorder prediction 351 379 - -
Vvi13g0371 760 MobiDBLite consensus disorder prediction 294 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0371 Vvi-Chr13 3150553 3152835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0371 82 759 GRAS Transcription Factor Family AT1G07530 47.961 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi13g0371 GRAS 1.7e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0371 - - vvi:100264982 1485.7