Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0360 ATGACGATCGGCATGCTGGAGGTTTTGCTCTTGGATGCCCGAGGCCTTCAGGATACCGATTTCCTCGGTGGAATGGACCCCTACGTTCTGATTCAATACAAAAATCAAGAGCGCAAGAGCAGCGTCGCCCGAGGCGAAGGCGGGAGTCCAGTGTGGAACGAGAAGTTCACATTCAGAGTGGAATATCCAGGGGGCGAAGGCCAGTACAAGCTAGTTCTGAAAATCATGGACAAGGACACCTTCTCTGCTGATGACTTCCTTGGCCAAGCCTCGATCTACTTGGAGGATCTGTTGGCATTGGGAGTGGAAAATGGAAAATCTGAGCTACATCCTTGCAAGTACAGAGTTGTTCGGACTGATCAGACTTACTGTGGAGAGATTCGAGTTGGCATCAATTTCACTCCAAAGGTAAAAGAGGAAAAAGATGAAATACAGGTCGGAGGATGGAAGGAAAGTGATTACTAG 465 0.486 MTIGMLEVLLLDARGLQDTDFLGGMDPYVLIQYKNQERKSSVARGEGGSPVWNEKFTFRVEYPGGEGQYKLVLKIMDKDTFSADDFLGQASIYLEDLLALGVENGKSELHPCKYRVVRTDQTYCGEIRVGINFTPKVKEEKDEIQVGGWKESDY* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0360 154 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Vvi13g0360 154 Pfam C2 domain 5 102 IPR000008 -
Vvi13g0360 154 PANTHER C2 DOMAIN-CONTAINING 3 141 - -
Vvi13g0360 154 CDD C2_putative_Elicitor-responsive_gene 4 127 - -
Vvi13g0360 154 Gene3D C2 domain 2 136 IPR035892 -
Vvi13g0360 154 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 137 IPR035892 -
Vvi13g0360 154 SMART C2_3c 5 106 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0360 Vvi-Chr13 3045933 3048444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0360 3 109 C2H2 Transcription Factor Family AT4G21160 33.645 1.41e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0360 - - vvi:100259835 317.39