Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0332 ATGGGGGGTTGTTTGAGCTCTCAAATTAAGGCTGAGAATCTTCTCTACATTGGGATTAAATCGAGATGCGGCAGCAATGATGGAAAATATTTAAGTGGTTCAAGTAGTAGCAAGGTCTCATCTGCCTCGGTGCCTACGACGCCTAGAACTGATGGTGGTTTTGGCTGTGTCTTTAAGGGATGGATTGATGAGAAGGCATTTACAGCTGCCAAGCCCGGGACGGGCATGGTCATTGCTGTGAAGAAGCTTAACCAAGAAGGTTTCCAAGGCCATAAGGAATGGTTGGCAGAAATTAATTATCTGGGGCAGCTGTATCATCCTAACCTTGTGAAATTGATCGGTTACTGCTTAGAGGATGATCATCGGCTTCTGGTCTATGAGTTCATGCCCAAAGGCAGCTTGGAGCACCATCTATTCAGGAGGGGTTCTTACTTCCAACCGCTTTCTTGGTCCCTCCGGATGAAGGTTGCCCTTGGAGCTGCCAAGGGTCTTGCGTTTCTTCATAGTAATAGTGTACAAGTGATATATCGAGACTTCAAAACTTCTAATATCCTACTTGATTCGAACTACAATGCAAAGCTCTCTGATTTTGGGCTAGCCAAAGATGGGCCAACAGGCGATAAAAGCCATGTTTCCACACGGGTGATGGGTACCTATGGGTATGCAGCCCCTGAATATTTGGCCACAGGTCATCTGACTACCAGAAGCGATGTATATAGTTTTGGGGTCGTCCTCCTTGAGATGTTGTCAGGCAGGCGAGCAGTGGACAAGAACCGCCCGTCCGGAGAACACAACTTAGTTGAGTGGGCAAGGCCATACCTGGCCAGCAAGCGCAAGATTTTCCATGTTTTGGACAGCCGGATTCAGGGCCAGTTCTCTTTGAATGGAGCACATGGAGCAGCTCGCGTTGCAATCCAATGCTTATCAACAGAACCCAAGCACCGGCCAAATATGGATCAGGTGGTAACAGCACTGGAGCAGCTTCAGGCTGACTCCAACAACACGACAGCCTCTCAAAACCGTCCCCGTCCTAATTTCCATAACAGCTCAAGCAATGGCCCCAAACACAACAGAACTGCCTATCCAAGACCCACTCGGTCCCCAGCACATCAAACTTAA 1119 0.4844 MGGCLSSQIKAENLLYIGIKSRCGSNDGKYLSGSSSSKVSSASVPTTPRTDGGFGCVFKGWIDEKAFTAAKPGTGMVIAVKKLNQEGFQGHKEWLAEINYLGQLYHPNLVKLIGYCLEDDHRLLVYEFMPKGSLEHHLFRRGSYFQPLSWSLRMKVALGAAKGLAFLHSNSVQVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTTRSDVYSFGVVLLEMLSGRRAVDKNRPSGEHNLVEWARPYLASKRKIFHVLDSRIQGQFSLNGAHGAARVAIQCLSTEPKHRPNMDQVVTALEQLQADSNNTTASQNRPRPNFHNSSSNGPKHNRTAYPRPTRSPAHQT* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0332 372 Pfam Protein kinase domain 67 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0332 372 Gene3D Transferase(Phosphotransferase) domain 1 130 352 - -
Vvi13g0332 372 ProSiteProfiles Protein kinase domain profile. 43 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g0332 372 PANTHER OS01G0588500 PROTEIN-RELATED 50 329 - -
Vvi13g0332 372 FunFam Serine/threonine-protein kinase BIK1 45 128 - -
Vvi13g0332 372 MobiDBLite consensus disorder prediction 334 372 - -
Vvi13g0332 372 Gene3D Phosphorylase Kinase; domain 1 50 129 - -
Vvi13g0332 372 FunFam Probable serine/threonine-protein kinase PBL8 129 344 - -
Vvi13g0332 372 CDD STKc_IRAK 52 328 - -
Vvi13g0332 372 SUPERFAMILY Protein kinase-like (PK-like) 51 327 IPR011009 -
Vvi13g0332 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0332 Vvi-Chr13 2772762 2775158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0332 51 325 Glycoside Hydrolase AT3G07070 52.899 1.24e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi13g0332 Pkinase 5.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0332 - - vvi:100246192 733.791