Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0330 ATGTCAATTCTGACTTGGTACAAGACTTTGCTTGACCCTACTGAGAGTGGTTGGTTTGAGCTGGCCTATAAATTACCTCGACTCCAGTTCGATTCCTTAGATCTGAGAGTGATTGTCGGGCGATTCTTCCTTGAAGTTGTCGACTCCGTAGGCAAAAATTTTGGATTCCACAGGATTGGATTTCCAAAGGGCAAGATTTTGCAGATCTTTCAAAAAAATTTCAAGTCCATTATGAGGAGGTACAGTCCACCATACTACAGTGCTCCAAGGAGAGGATATGGGGGACGAGAAAGAAGCCCTCCCAGAAGGGGATATGGTGGGTATGGGAGACGCAAGGAACAGAATCATGGAAGCCTTTTGGTCCGGAATATTCCTCTGAATTGCAGACCAGAGGATCTTCGTGTTCCATTTGAAAGATTTGGACTAGTGAGGGATGTATATCTTCCAAAGGATTATTACACAGGGGAGCCTCGGGGCTTTGCCTTTGTGCAATTTGTGGACCCTTATGAAGCTTCTGAGGCTCAGTATCATATGAATGGACAGATTTTTGCTGGAAGGGAGATAAGTGTTGTTGTTGCCGCGGAGACAAGGAAACGGCCTGAGGAGATGCGTACCCGGGCCAGGGTCAGAGGACCATCAAGTTATGGAGGACGGAGATCATCTTATTATGGGGGTTCTCGGTCTCGATCAGTGTCCCGATCACGTTCCCCCCCTCGTCTCCTTTCAGGATCCAGAAGATACCGCTCAAGATCCTATTCTCCTGTTCCCAGACGTCGTGGTGACTATTCTGTTTCCCCAAGAAGACGTGTTGAACACCCTAGGTCACCAAGAGATCATCCACCAGAGCGAGATGGTGACCACATTCGCCGCTCATACTCTCCAGGTTATGATGATGCTGCTGACCAAAATCATCATACAGGCAATGGATATCTCGAGAAATCTGCGTATGAGCCTGATGAAGCACGAGATCGTCGGAGGTCGCCTCCTCCCCGACGAGTTTCAAGATCACTGTCTGGGTCTAGATCTAGATCTGCTGATGTGTCACCCAGGCACAGCAGATAA 1062 0.4831 MSILTWYKTLLDPTESGWFELAYKLPRLQFDSLDLRVIVGRFFLEVVDSVGKNFGFHRIGFPKGKILQIFQKNFKSIMRRYSPPYYSAPRRGYGGRERSPPRRGYGGYGRRKEQNHGSLLVRNIPLNCRPEDLRVPFERFGLVRDVYLPKDYYTGEPRGFAFVQFVDPYEASEAQYHMNGQIFAGREISVVVAAETRKRPEEMRTRARVRGPSSYGGRRSSYYGGSRSRSVSRSRSPPRLLSGSRRYRSRSYSPVPRRRGDYSVSPRRRVEHPRSPRDHPPERDGDHIRRSYSPGYDDAADQNHHTGNGYLEKSAYEPDEARDRRRSPPPRRVSRSLSGSRSRSADVSPRHSR* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0330 353 MobiDBLite consensus disorder prediction 197 353 - -
Vvi13g0330 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 188 IPR000504 GO:0003723
Vvi13g0330 353 MobiDBLite consensus disorder prediction 88 112 - -
Vvi13g0330 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Vvi13g0330 353 MobiDBLite consensus disorder prediction 95 110 - -
Vvi13g0330 353 MobiDBLite consensus disorder prediction 261 294 - -
Vvi13g0330 353 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 110 251 - -
Vvi13g0330 353 SUPERFAMILY RNA-binding domain, RBD 114 225 IPR035979 GO:0003676
Vvi13g0330 353 SMART rrm1_1 118 191 IPR000504 GO:0003723
Vvi13g0330 353 Gene3D - 109 230 IPR012677 -
Vvi13g0330 353 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 113 302 - -
Vvi13g0330 353 MobiDBLite consensus disorder prediction 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0330 Vvi-Chr13 2759451 2766414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0330 118 206 Eukaryotic Initiation Factors Gene Family AT2G36660 29.213 5.97e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0330 K12900 - vvi:100258210 404.445