Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0328 ATGGATGGCACCACCACCCACATCTTCGGCCTCTCTCCGCTCCCTGTGGCGGTCATCGGCATCGTTCTAGCCATCGCCGTGCTATTAACGTACCACTGTATTGTGGCACATTGGTGCAGCCCAAGGGAGAGTAGCAGTAGTACAAGTCAGAGATGGATGGTGAGTCCCGGGAGTGTCAACAGCTCAGATGATTCAATCACAAACCTCATTCCTTCTTTCCACTACACCAAAGATATTGGCTTGGTAAATGCTACTTGTGTTGTATGCTTGTGTGAGTTCAAGGATGGTGAGGCGATTCGGATTTTACCCAAGTGTTTGCACTCATTTCATGTGCCTTGTATCGATATGTGGCTCTGTTCCCACTCCAATTGCCCGCTTTGTCGGACCACCGTGATATCGTCTGGACATGTATTGGGTCACCGGCCGGAGTATCATACAGTGAGGCTGCCGGATTCCAGTCGACCATGGCAAGCAATGTGA 480 0.5062 MDGTTTHIFGLSPLPVAVIGIVLAIAVLLTYHCIVAHWCSPRESSSSTSQRWMVSPGSVNSSDDSITNLIPSFHYTKDIGLVNATCVVCLCEFKDGEAIRILPKCLHSFHVPCIDMWLCSHSNCPLCRTTVISSGHVLGHRPEYHTVRLPDSSRPWQAM* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0328 159 SUPERFAMILY RING/U-box 71 134 - -
Vvi13g0328 159 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Vvi13g0328 159 FunFam RING-H2 finger protein ATL1 49 133 - -
Vvi13g0328 159 Pfam Ring finger domain 85 128 IPR001841 -
Vvi13g0328 159 SMART ring_2 86 127 IPR001841 -
Vvi13g0328 159 ProSitePatterns Zinc finger C2H2 type domain signature. 124 145 IPR013087 -
Vvi13g0328 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 133 IPR013083 -
Vvi13g0328 159 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 132 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0328 Vvi-Chr13 2749369 2749848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0328 13 137 C3H Transcription Factor Family AT3G03550 34.641 1.66e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0328 - - vvi:104881166 318.931