Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0327 ATGGCGGAGGATCTCCCTGACTTGTTCTTTCTTCTAGCCGGAGCTGCATCCGCAGCTCTCGTCTTCACAATCTATCATGTCTCCGCTTGGTGCAACAGGTCCATAACTTCCACTGCAGCTCCTACTGGGCCACAGCAGCTGGACCGGCCATTGACATATGAAGATGGGGCGACACCGGCCGGATGCGTTGAGATCACGACGGTGCGTAAGTATGAGAAGGATATGGAGTTGGTGGGAGATGATAGAATGTGTGTAGTGTGCTTGTCTGAGTTTGAAGAGGGTGAGGAGCTACGTACTTTGCCTCATTGCATGCACTCTTTTCATGTTCCATGCATCGATATGTGGCTCAATTCTCACATGAATTGCCCCTTGTGCCGCTTGCCTTCATCGCTTATGTTTTTAGAGACGCAGCAGGATTTGCGAATTTCGTCTACTAACAATATTGCTGCATAA 453 0.4945 MAEDLPDLFFLLAGAASAALVFTIYHVSAWCNRSITSTAAPTGPQQLDRPLTYEDGATPAGCVEITTVRKYEKDMELVGDDRMCVVCLSEFEEGEELRTLPHCMHSFHVPCIDMWLNSHMNCPLCRLPSSLMFLETQQDLRISSTNNIAA* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0327 150 CDD RING-H2_EL5-like 84 126 - -
Vvi13g0327 150 FunFam RING-H2 finger protein ATL52 45 131 - -
Vvi13g0327 150 SMART ring_2 84 125 IPR001841 -
Vvi13g0327 150 Pfam Ring finger domain 83 126 IPR001841 -
Vvi13g0327 150 ProSiteProfiles Zinc finger RING-type profile. 84 126 IPR001841 -
Vvi13g0327 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 130 IPR013083 -
Vvi13g0327 150 SUPERFAMILY RING/U-box 75 131 - -
Vvi13g0327 150 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 127 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0327 Vvi-Chr13 2742040 2742492 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0327 12 126 C3H Transcription Factor Family AT5G17600 41.270 5.30e-22 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0327 - - vvi:104881167 303.138