Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0326 ATGGCGGAAGACAACCCCAACAACCCCATCCTCTCCAAATTCGCAGTTATTCTCGCCGGCGTCGCATCCGCCGCTGTGGTGGTCACAGTCTACCACTGCGTCGTCGTTTCCTGCCGCAACAGGGGACGCCAGAGAAGCGATCGAGAGCGGCTGCAGCAACTCATGTACCAACGAGCAGATCAGACGCCGAGCAGCGTCGACAACTCCGCGGCTCTTCTCATGATCCCGGCGCATAAGTACCATAAGGGGATGGAGCTAGCGGGGAATGATGATGGGGTTTGTGCGGTGTGTTTGTCTGAGTTTGAAGAGGGAGAGGAGCTGCGTACTTTGCCTGAGTGCATGCACTCCTTTCATGTAGCTTGCATCGATATGTGGCTCTATTCTCACACCAACTGCCCCTTGTGCCGTTCCAACGCCACACCCTCGCCGCTGTTACAGCATGGTTTACCGGAGTCAAGTTCCGGTGGGTTAACGGATGTTGTTGTCCAATCTCGAAGGCTATGA 504 0.5575 MAEDNPNNPILSKFAVILAGVASAAVVVTVYHCVVVSCRNRGRQRSDRERLQQLMYQRADQTPSSVDNSAALLMIPAHKYHKGMELAGNDDGVCAVCLSEFEEGEELRTLPECMHSFHVACIDMWLYSHTNCPLCRSNATPSPLLQHGLPESSSGGLTDVVVQSRRL* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0326 167 FunFam RING-H2 finger protein ATL52 53 141 - -
Vvi13g0326 167 CDD RING-H2_EL5-like 94 136 - -
Vvi13g0326 167 SUPERFAMILY RING/U-box 78 142 - -
Vvi13g0326 167 Pfam Ring finger domain 94 136 IPR001841 -
Vvi13g0326 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 143 IPR013083 -
Vvi13g0326 167 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Vvi13g0326 167 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 139 IPR044675 -
Vvi13g0326 167 SMART ring_2 94 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0326 Vvi-Chr13 2740552 2741055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0326 16 140 C3H Transcription Factor Family AT5G17600 36.364 1.29e-23 93.2