Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0304 ATGCCTGATCCGCTGGACATGTCTCTCGATGAAATCATCAGAAATAAGAAGAAATCCGCAGGAGTTAGCAGCAATGTCAGAGGCATAGGTTCCGGTCCCGGCCCCGGCCCAGCTCGCCGTTTCGGGAACCGCGAACTGCTCAGAACGACGCCGTATTCGGTTGCCCCGGTTTTTCAAGTGCTGGAAGCAGCATGGAAGCAGGAAGTGTTTACAGGTGGAGTGTCTACAATGGAGACTGGTACCAAGCTGTATATTTCGAACTTAGAGTACGGTGTTTCTAATGATGACATTAAGGAGCTCTTTTCCGAGGTTGGTGAACTGAAACAATACTCAATCCATTATGATAAGAGTGGAATATCAAAGGGGACAGGCGAAGTTGTCTTTTTGCGTCAGACAGATGCTCTAGCAGCCATTAAGAGATACAACAATGTTCAGCTTGATGGTAAGCCACAGAAAATAGATCTTATAGGAGCAAATTTCTAG 483 0.4658 MPDPLDMSLDEIIRNKKKSAGVSSNVRGIGSGPGPGPARRFGNRELLRTTPYSVAPVFQVLEAAWKQEVFTGGVSTMETGTKLYISNLEYGVSNDDIKELFSEVGELKQYSIHYDKSGISKGTGEVVFLRQTDALAAIKRYNNVQLDGKPQKIDLIGANF* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0304 160 SUPERFAMILY RNA-binding domain, RBD 78 155 IPR035979 GO:0003676
Vvi13g0304 160 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 158 - -
Vvi13g0304 160 MobiDBLite consensus disorder prediction 18 41 - -
Vvi13g0304 160 CDD RRM_THOC4 81 155 - -
Vvi13g0304 160 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 158 IPR000504 GO:0003723
Vvi13g0304 160 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 150 IPR000504 GO:0003723
Vvi13g0304 160 Gene3D - 75 156 IPR012677 -
Vvi13g0304 160 SMART rrm1_1 82 154 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0304 Vvi-Chr13 2599623 2601967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0304 80 155 Eukaryotic Initiation Factors Gene Family AT2G23350 34.211 6.16e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0304 K12881 - vvi:100258168 208.379