Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0298 ATGCAGTTTCCAGAAATGAGGAATGCGATCCTACCGTCTTTTTCTTCACAATATTGCAGCTTGGGAAACAATGAAATAATTCAGATTCCAAACTCAGAAGTTTCAATGCAAATGGACCCCAAAGTGAATGCCTACAGCAGCAGCTTTATTATCAGTTCTAAAGCATACAGCAATCAGCTAGGAGATGGGGGATTTGCCATGCCTGCTCAGACCTTCATTAATGATGATCAACCAGGAACATCTTTATCATCCACAATCAAGAGACTAAGTCACCCTTGCCCGGCTGCGGATTATCAGACTAGCATGCCAAGATATGACGGCATTTCTCAGATTCCACAGCTTGAAGATGCTATGCAAAATGCAAGGAAACGACCCATTGAGGCAGTCGATGATCTGGTGGGGAGGAAGATTTTTGAGGAGTGGAAGAGCAGTAAGAAGAAGAAGAAGACTGTGAGCTCTGAAGGGCAATGGCATCCTCAAGCTAACAAAGAAGCCATGGAGATCCAAAGACAAAGACTGCATGTGCCAGTGAAGAGAAGCCAAAAACTGAGTGACAGGATCACAGCTCTTCAAAAGCTGGTTTCCCCTTATGGAAAGACAGACACTGCTTCAGTTCTTCAGGAGGCTTCTCTTTATATCAAACTCCTCCAAGGACAGATTAGGAACCTGTTTCAGATACTAAGTACCTCATACTGCAGAGTTACACCTCTTCATCAGCAGAAAATTGGAGAGAAAGAGCAGGACTTACAGAGCAGAGGGCTTTGCTTGGTGCCCATAGCATTCACTCAGAAACTGACAAGGGAAGACCAGGTTGATCATCATCAAGCCATGGAGCAGAGGGAGTTTTAG 849 0.4452 MQFPEMRNAILPSFSSQYCSLGNNEIIQIPNSEVSMQMDPKVNAYSSSFIISSKAYSNQLGDGGFAMPAQTFINDDQPGTSLSSTIKRLSHPCPAADYQTSMPRYDGISQIPQLEDAMQNARKRPIEAVDDLVGRKIFEEWKSSKKKKKTVSSEGQWHPQANKEAMEIQRQRLHVPVKRSQKLSDRITALQKLVSPYGKTDTASVLQEASLYIKLLQGQIRNLFQILSTSYCRVTPLHQQKIGEKEQDLQSRGLCLVPIAFTQKLTREDQVDHHQAMEQREF* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0298 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 234 IPR036638 GO:0046983
Vvi13g0298 282 CDD bHLH_AtbHLH_like 178 223 IPR045239 -
Vvi13g0298 282 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 80 263 - -
Vvi13g0298 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0298 Vvi-Chr13 2545970 2548885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0298 178 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 47.368 6.44e-21 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0298 - - vvi:100265056 551.977