Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g0293 ATGGCTTTCCACAAGAATAGCATTTGGGCAAGAAATGCTGGGTGTCTAACTGATGGAGAGAAAGTTTATGATGATTCCTCCGGAAATGAACAGAAGCGTGGTCAACAATGGCTTATGGATGCAACAGAGCCAGAACTGTTCTGCAACAAGAAGCAAGCAGTAGAAGCTGTTAACAGCTGGAATATTTCAGGAATTTCAAATATGAATGATTCTCCATGTGGAAACATTTCAAGTTTTGCATCTGTTTCAGGGCCATTCTTGGACCGCCTATTTGGAACTGACCTTAAAATAATTCATCCTCTTAGCAGGAACATTCCATCTGCTAGTACTGGGAATATGGATATGGGAAGAAAGGGATTTGAGTTTCCATTCAGAAGTGATTCCTCGTTTGGTTTATCTATGTCTCATGCTATAGCAGATCCATCTTTCAACTACAGTGGAATCAGAAAAGTTAAAGTGAATGAAGTGAGGGACTCTGACAATGGCATGCCTGTAGGAATGGGGCACTTCTATAATAGGGGAGGTTACAATATGATTTCAGCTGGCTCAGCCTATAATAAGAGTGATTACAGCAACATTTCACTGGGCCCAGTTTATAATAATGGTAATCAGAATACTATTTCAATGGGTGCTTACTTTAATAAGGCAACTTCCAATTTTGGCTCAAGAAGTCATACCTTCAACCAGGAAACTGGCAATTCCATATCAATGGGTCATACCTATCACAAAGTGGATAGGAGTGTGTTGTCCATGGGTCATTTCTATGACAATGGGAATGGAAATTTTTTATCAAAGGTTCAGCAGCATGGAAAGGAAGATGGCAGTATCATGTCAATGAGTCCTGCTTATAACAAGGGGCACGAGAAATTTATTTCAATGGGCCCTTCCTACAGTGAAGCAAATGGTAATTTCGGTACAATGGGTATGGTCTATAGTAAGCACAATGATGATATCATGTCCATGGGTCCAACCAATGATAGGGTGGAGACCGGTAATGTGTCATTGTGTCTCACGACTCTCACCTATGACAACGAAGATTCTAGCATTTTATCTATGGGCCACAACTACAATAAGGGCCAGAACAATACTGTCTCATTTGGAGGCTTTCATGAAGAACCTGAGACAAATTCTTCTGGCAGGATCATTGGCAGCTATGATTTGTTGATGAGTCGGTCATCAGCACAAGCTCCAGAAGCAGTTTGCCAGAAAGATGCTCAAGCTTCAGAAATACTTTGTCAGCAAGATGCACGAGCCTCAGGAGTACTCGGCCAGAAAGATACTCAAGCTTCAGAAATACTTGGCCAGAAAGATGCTCAAACTTCACAAGTACTTACCCAGAAAGATGCTCAATTGTCAGAAATACCTGGCCAGCAAGAAGTACAAACTTCAGAACAAGTACTTAGCCAAAAATATTTGGCTCAATCGAATGCTGATCCAGCTGCTAGTTGCACACCAAAAGCTACTTCTAAAACCGATACTGTCTCAAAAAATAAACAGATAAATACTAAAAAGGATCCCTCAAGCCACTTTCCTTTGAATGTTAAAAGCTTGTTATCAACTGGTATGTTTGATGGGGTTCCTGTGAAGTATGTTTCATGGACACGGGAGAAGAGTGTTCGAGGAGTTATAAAAGGGAGTGGGTATTTGTGCAGCTGTAAGGACTGCAATAGCTCTAATTGTCTTAATGCTTATGAGTTTGAGCGCCATGCTAATTGCAAGACCAAACACCCAAACAATCATATTTACTTCGAGAATGGGAAAACCATTTATGCAGTGGTCCAAGAGCTGAAAAACACTCCTCAAGACAAGCTTTTTGAAGTGATTCAAAATGTAACTGGATGTCCTATTAATCAGAAGAATTTTCAAACTTGGAAAGCATCATATCAGGCGGCAACAGTTGAACTTCAGCGTATCTATGGAAAGGATGGAGCCACAGGACCAATCTTGAAATAA 1953 0.4066 MAFHKNSIWARNAGCLTDGEKVYDDSSGNEQKRGQQWLMDATEPELFCNKKQAVEAVNSWNISGISNMNDSPCGNISSFASVSGPFLDRLFGTDLKIIHPLSRNIPSASTGNMDMGRKGFEFPFRSDSSFGLSMSHAIADPSFNYSGIRKVKVNEVRDSDNGMPVGMGHFYNRGGYNMISAGSAYNKSDYSNISLGPVYNNGNQNTISMGAYFNKATSNFGSRSHTFNQETGNSISMGHTYHKVDRSVLSMGHFYDNGNGNFLSKVQQHGKEDGSIMSMSPAYNKGHEKFISMGPSYSEANGNFGTMGMVYSKHNDDIMSMGPTNDRVETGNVSLCLTTLTYDNEDSSILSMGHNYNKGQNNTVSFGGFHEEPETNSSGRIIGSYDLLMSRSSAQAPEAVCQKDAQASEILCQQDARASGVLGQKDTQASEILGQKDAQTSQVLTQKDAQLSEIPGQQEVQTSEQVLSQKYLAQSNADPAASCTPKATSKTDTVSKNKQINTKKDPSSHFPLNVKSLLSTGMFDGVPVKYVSWTREKSVRGVIKGSGYLCSCKDCNSSNCLNAYEFERHANCKTKHPNNHIYFENGKTIYAVVQELKNTPQDKLFEVIQNVTGCPINQKNFQTWKASYQAATVELQRIYGKDGATGPILK* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g0293 650 MobiDBLite consensus disorder prediction 478 507 - -
Vvi13g0293 650 Pfam Tify domain binding domain 541 596 IPR032308 -
Vvi13g0293 650 PANTHER AUTOIMMUNE REGULATOR 11 597 - -
Vvi13g0293 650 MobiDBLite consensus disorder prediction 478 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g0293 Vvi-Chr13 2508655 2517767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g0293 503 629 PHD Transcription Factor Family AT3G53680 52.756 9.74e-37 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g0293 - - vvi:100249637 1328.92